Variant report

Variant	rs67377365
Chromosome Location	chr4:160165225-160165226
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11100211	0.87[EUR][1000 genomes]
rs11730876	0.87[EUR][1000 genomes]
rs12502799	0.87[EUR][1000 genomes]
rs12503790	0.88[EUR][1000 genomes]
rs12507531	0.87[EUR][1000 genomes]
rs12508599	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12509160	0.83[EUR][1000 genomes]
rs12509165	0.83[EUR][1000 genomes]
rs13116575	0.88[EUR][1000 genomes]
rs13119443	0.87[EUR][1000 genomes]
rs13124646	0.85[EUR][1000 genomes]
rs13152231	0.88[EUR][1000 genomes]
rs56806866	0.89[EUR][1000 genomes]
rs6536402	0.87[EUR][1000 genomes]
rs7659528	0.88[EUR][1000 genomes]
rs9992208	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830129	chr4:160061694-160270760	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160133400-160171600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:160149400-160169600	Weak transcription	Pancreas	Pancrea
3	chr4:160149400-160171800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:160149400-160172000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:160149400-160173000	Weak transcription	Placenta	Placenta
6	chr4:160149400-160216800	Weak transcription	Small Intestine	intestine
7	chr4:160149600-160171800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:160150600-160172000	Weak transcription	Lung	lung
9	chr4:160150800-160168400	Weak transcription	NH-A	brain
10	chr4:160150800-160172000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:160151400-160171600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:160152000-160171800	Weak transcription	Fetal Intestine Large	intestine
13	chr4:160152200-160169400	Weak transcription	NHLF	lung
14	chr4:160154800-160165800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:160154800-160171400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr4:160156200-160170000	Weak transcription	Left Ventricle	heart
17	chr4:160157200-160169600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr4:160157200-160169600	Weak transcription	Osteobl	bone
19	chr4:160157400-160169600	Weak transcription	HepG2	liver
20	chr4:160157400-160171800	Weak transcription	Fetal Intestine Small	intestine
21	chr4:160157600-160169600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:160157600-160169600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:160159400-160171000	Weak transcription	GM12878-XiMat	blood
24	chr4:160159600-160169200	Weak transcription	Fetal Heart	heart
25	chr4:160160000-160169800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr4:160160400-160166000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr4:160160400-160169800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr4:160160600-160169600	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr4:160160600-160169600	Weak transcription	HUVEC	blood vessel
30	chr4:160160600-160179800	Weak transcription	NHEK	skin
31	chr4:160161000-160169600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr4:160161200-160169600	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr4:160162000-160165400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr4:160162400-160169400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:160162600-160169400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:160162600-160169400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:160162600-160169600	Weak transcription	Adipose Nuclei	Adipose
38	chr4:160162600-160172200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr4:160162600-160177200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:160162800-160171600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr4:160163000-160169400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:160163000-160169600	Weak transcription	NHDF-Ad	bronchial
43	chr4:160163400-160169600	Weak transcription	Fetal Lung	lung
44	chr4:160164200-160169200	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:160164200-160169600	Weak transcription	Brain Angular Gyrus	brain
46	chr4:160164400-160178000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr4:160164800-160165800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:160164800-160165800	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr4:160164800-160169600	Weak transcription	Fetal Kidney	kidney
50	chr4:160165000-160165600	Strong transcription	Primary hematopoietic stem cells	blood

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