Variant report

Variant	rs6737860
Chromosome Location	chr2:177594983-177594984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16864347	0.92[ASN][1000 genomes]
rs61370766	0.84[ASN][1000 genomes]
rs7591917	0.84[ASN][1000 genomes]
rs7594436	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527737	chr2:177538266-177692572	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv583686	chr2:177538266-177692572	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1006500	chr2:177548521-177707097	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:177593000-177596600	Enhancers	Ovary	ovary
2	chr2:177594000-177595200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr2:177594000-177595400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:177594000-177595600	Enhancers	Fetal Lung	lung
5	chr2:177594200-177595000	Enhancers	Fetal Heart	heart
6	chr2:177594200-177595200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:177594200-177595200	Enhancers	Adipose Nuclei	Adipose
8	chr2:177594400-177595000	Enhancers	Duodenum Smooth Muscle	Duodenum
9	chr2:177594400-177595000	Enhancers	Osteobl	bone
10	chr2:177594400-177595200	Enhancers	Aorta	Aorta
11	chr2:177594400-177595200	Enhancers	Liver	Liver
12	chr2:177594400-177595400	Enhancers	Colon Smooth Muscle	Colon
13	chr2:177594600-177595000	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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