Variant report

Variant	rs6738364
Chromosome Location	chr2:206024264-206024265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:206022756..206024653-chr2:206025824..206027796,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1510769	0.83[AFR][1000 genomes]
rs16824704	0.88[AFR][1000 genomes]
rs16836974	0.84[AFR][1000 genomes]
rs34053924	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6707548	0.86[AFR][1000 genomes]
rs6757073	0.88[AFR][1000 genomes]
rs73057200	0.84[AFR][1000 genomes]
rs9784156	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv1000779	chr2:205969138-206064554	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1009424	chr2:205969138-206078240	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv525418	chr2:205969220-206077607	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv875729	chr2:205972555-206027314	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205970000-206026000	Weak transcription	HSMMtube	muscle
2	chr2:205976800-206024400	Weak transcription	Aorta	Aorta
3	chr2:205991000-206036600	Weak transcription	HSMM	muscle
4	chr2:205994600-206025800	Weak transcription	Fetal Kidney	kidney
5	chr2:206009000-206058000	Weak transcription	Fetal Intestine Small	intestine
6	chr2:206014600-206035800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr2:206020400-206025400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:206021600-206053000	Weak transcription	Ovary	ovary
9	chr2:206021600-206058000	Weak transcription	Left Ventricle	heart
10	chr2:206021800-206038000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr2:206022000-206025800	Weak transcription	Right Ventricle	heart
12	chr2:206022800-206026000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:206022800-206035400	Weak transcription	Brain Hippocampus Middle	brain
14	chr2:206023000-206036000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr2:206023200-206025200	Strong transcription	Pancreas	Pancrea
16	chr2:206023400-206036400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr2:206023400-206036600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:206023600-206025000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr2:206024000-206024800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr2:206024200-206025000	Strong transcription	Fetal Intestine Large	intestine
21	chr2:206024200-206025200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:206024200-206025200	Strong transcription	Fetal Stomach	stomach
23	chr2:206024200-206025800	Strong transcription	Adipose Nuclei	Adipose
24	chr2:206024200-206060400	Weak transcription	Liver	Liver

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