Variant report

Variant	rs67384524
Chromosome Location	chr15:43834894-43834895
allele	-/AC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:43828054..43831995-chr15:43833960..43836416,4	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534649	chr15:43591116-43851142	Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv1846172	chr15:43632138-44116986	Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
3	esv1846701	chr15:43759774-44116986	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv437799	chr15:43784000-43989518	Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv832988	chr15:43804641-43976862	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv428304	chr15:43823158-44008580	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	esv2758379	chr15:43823158-44148641	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
8	esv2760028	chr15:43823158-44148641	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
9	nsv427960	chr15:43823158-44148641	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
10	nsv428633	chr15:43823160-44008580	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	nsv1039949	chr15:43831879-43992646	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	esv2757598	chr15:43831923-44058634	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
13	esv2761766	chr15:43834318-44014255	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	esv1689779	chr15:43834893-43834895	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43812000-43844400	Weak transcription	Fetal Brain Male	brain
2	chr15:43815800-43839400	Weak transcription	Stomach Mucosa	stomach
3	chr15:43818000-43835400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr15:43818000-43852600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr15:43818200-43851600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:43822800-43842800	Weak transcription	HSMM	muscle
7	chr15:43823200-43835600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr15:43823600-43837400	Weak transcription	Fetal Lung	lung
9	chr15:43823600-43840000	Weak transcription	Psoas Muscle	Psoas
10	chr15:43823800-43836400	Weak transcription	NHLF	lung
11	chr15:43823800-43852600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:43824200-43842800	Weak transcription	HSMMtube	muscle
13	chr15:43824200-43845000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:43824800-43853000	Weak transcription	GM12878-XiMat	blood
15	chr15:43824800-43853200	Weak transcription	Hela-S3	cervix
16	chr15:43827200-43849800	Weak transcription	Colonic Mucosa	Colon
17	chr15:43827400-43839800	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:43827400-43841400	Weak transcription	NHEK	skin
19	chr15:43827400-43842400	Weak transcription	Osteobl	bone
20	chr15:43827400-43852600	Weak transcription	Left Ventricle	heart
21	chr15:43827400-43854000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:43827600-43837000	Weak transcription	Gastric	stomach
23	chr15:43827600-43839200	Weak transcription	Primary T cells from cord blood	blood
24	chr15:43827600-43839200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr15:43827600-43840400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:43827600-43840400	Weak transcription	Fetal Stomach	stomach
27	chr15:43827600-43846800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:43827600-43848400	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr15:43827600-43848600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr15:43827600-43849000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:43827600-43849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr15:43827600-43851200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr15:43827600-43851400	Weak transcription	Right Ventricle	heart
34	chr15:43827600-43851800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr15:43827600-43852800	Weak transcription	Lung	lung
36	chr15:43827600-43854000	Weak transcription	Aorta	Aorta
37	chr15:43827600-43855400	Weak transcription	Ovary	ovary
38	chr15:43827800-43835600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr15:43827800-43838600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr15:43827800-43839800	Weak transcription	Brain Anterior Caudate	brain
41	chr15:43827800-43839800	Weak transcription	Brain Hippocampus Middle	brain
42	chr15:43827800-43839800	Weak transcription	HMEC	breast
43	chr15:43827800-43841000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:43827800-43841400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr15:43827800-43842800	Weak transcription	Brain Angular Gyrus	brain
46	chr15:43827800-43845200	Weak transcription	Liver	Liver
47	chr15:43827800-43845400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:43827800-43848200	Weak transcription	Brain Germinal Matrix	brain
49	chr15:43827800-43848600	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr15:43827800-43848800	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links