Variant report

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11903513	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6705261	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv963919	chr2:72372956-72830387	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:72405800-72418600	Weak transcription	Brain Angular Gyrus	brain
2	chr2:72406400-72425800	Weak transcription	Brain Anterior Caudate	brain
3	chr2:72406800-72418600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:72406800-72419800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:72407200-72425200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr2:72407600-72418400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:72407800-72424600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:72409600-72426000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:72410600-72420000	Weak transcription	A549	lung
10	chr2:72410800-72418000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr2:72412800-72421600	Weak transcription	Gastric	stomach
12	chr2:72412800-72425400	Weak transcription	Stomach Mucosa	stomach
13	chr2:72412800-72429800	Weak transcription	Right Ventricle	heart
14	chr2:72412800-72431000	Weak transcription	Left Ventricle	heart
15	chr2:72415000-72418600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr2:72415200-72426000	Weak transcription	NHEK	skin
17	chr2:72415400-72418800	Weak transcription	Fetal Stomach	stomach
18	chr2:72415400-72424400	Weak transcription	Aorta	Aorta
19	chr2:72415400-72426000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:72415400-72430800	Weak transcription	Placenta	Placenta

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