Variant report

Variant	rs67403526
Chromosome Location	chr3:160341103-160341104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs2305401	0.95[ASN][1000 genomes]
rs3736627	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3806629	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56124988	0.95[ASN][1000 genomes]
rs56333234	0.85[EUR][1000 genomes]
rs56343019	0.95[ASN][1000 genomes]
rs56396435	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57050097	0.90[ASN][1000 genomes]
rs57277659	0.82[ASN][1000 genomes]
rs57328745	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57555307	0.95[ASN][1000 genomes]
rs58377812	0.86[ASN][1000 genomes]
rs59364034	0.85[EUR][1000 genomes]
rs59695030	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60066272	0.95[ASN][1000 genomes]
rs60517889	0.90[ASN][1000 genomes]
rs62272209	0.85[EUR][1000 genomes]
rs62272210	0.85[EUR][1000 genomes]
rs62272213	0.85[EUR][1000 genomes]
rs62272221	0.81[EUR][1000 genomes]
rs62272229	0.81[EUR][1000 genomes]
rs62272249	0.82[ASN][1000 genomes]
rs62272251	0.82[ASN][1000 genomes]
rs62272254	0.90[ASN][1000 genomes]
rs62272255	0.90[ASN][1000 genomes]
rs62272256	0.90[ASN][1000 genomes]
rs62272257	0.90[ASN][1000 genomes]
rs62272258	0.90[ASN][1000 genomes]
rs62272259	0.90[ASN][1000 genomes]
rs62272780	0.95[ASN][1000 genomes]
rs62272781	0.95[ASN][1000 genomes]
rs62272783	0.95[ASN][1000 genomes]
rs62272785	0.95[ASN][1000 genomes]
rs62272787	0.95[ASN][1000 genomes]
rs62272788	0.95[ASN][1000 genomes]
rs62272790	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62272793	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62272799	0.84[ASN][1000 genomes]
rs62272804	0.95[ASN][1000 genomes]
rs62272805	0.95[ASN][1000 genomes]
rs62272806	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62272831	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62272833	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62272836	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62272838	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73155914	0.95[ASN][1000 genomes]
rs73155963	0.85[EUR][1000 genomes]
rs7648832	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	nsv877703	chr3:160325458-160398885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160338600-160342400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr3:160339400-160341200	Enhancers	Liver	Liver
3	chr3:160339600-160341200	Enhancers	Muscle Satellite Cultured Cells	--

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