Variant report

Variant	rs6740381
Chromosome Location	chr2:39053895-39053896
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:39036853..39041014-chr2:39051745..39054794,3	K562	blood:
2	chr2:39053503..39057037-chr2:39058758..39062643,3	K562	blood:
3	chr2:39052271..39054519-chr2:39105359..39107014,2	K562	blood:
4	chr2:38976908..38981867-chr2:39050395..39056507,16	K562	blood:
5	chr2:38970642..38974334-chr2:39052366..39056279,4	K562	blood:
6	chr2:38974988..38979943-chr2:39053736..39058253,10	K562	blood:
7	chr2:39053503..39055563-chr2:39060007..39062643,2	K562	blood:

Variant related genes	Relation type
ENSG00000152147	Chromatin interaction
ENSG00000223922	Chromatin interaction
ENSG00000115875	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2305516	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv9646	chr2:38358311-39082189	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:39006400-39085600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:39019000-39057800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr2:39022000-39066800	Weak transcription	Stomach Mucosa	stomach
4	chr2:39026600-39079800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr2:39030600-39088200	Weak transcription	Fetal Heart	heart
6	chr2:39032800-39072800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr2:39036000-39054000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:39037200-39055800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr2:39037400-39054000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:39037400-39054000	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr2:39037400-39054600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr2:39038200-39056000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:39038800-39095600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:39038800-39102200	Weak transcription	Gastric	stomach
15	chr2:39039000-39085400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr2:39039000-39090000	Weak transcription	Esophagus	oesophagus
17	chr2:39039000-39101200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr2:39039000-39102000	Weak transcription	Colonic Mucosa	Colon
19	chr2:39040000-39069000	Strong transcription	Fetal Muscle Leg	muscle
20	chr2:39040600-39056000	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr2:39040800-39054200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:39042800-39063000	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr2:39042800-39080600	Weak transcription	Small Intestine	intestine
24	chr2:39043600-39079800	Weak transcription	Right Ventricle	heart
25	chr2:39044800-39056800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr2:39046000-39073200	Weak transcription	Pancreas	Pancrea
27	chr2:39046200-39070200	Weak transcription	NHLF	lung
28	chr2:39046400-39057200	Weak transcription	HepG2	liver
29	chr2:39048000-39055600	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr2:39048400-39054200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr2:39048400-39060800	Strong transcription	Fetal Stomach	stomach
32	chr2:39049000-39054400	Strong transcription	Placenta	Placenta
33	chr2:39049000-39056000	Strong transcription	Fetal Intestine Small	intestine
34	chr2:39049400-39054000	Strong transcription	Brain Hippocampus Middle	brain
35	chr2:39049400-39054200	Strong transcription	Fetal Brain Female	brain
36	chr2:39049400-39054800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr2:39049400-39055400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
38	chr2:39049600-39054000	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr2:39049600-39054000	Strong transcription	Primary T cells from cord blood	blood
40	chr2:39049600-39054000	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr2:39049600-39054000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr2:39049600-39054200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr2:39049600-39054200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr2:39049600-39055600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr2:39049600-39055600	Strong transcription	Duodenum Smooth Muscle	Duodenum
46	chr2:39049600-39056200	Strong transcription	Fetal Intestine Large	intestine
47	chr2:39049800-39054000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr2:39049800-39054000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr2:39049800-39054000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:39049800-39054000	Strong transcription	Muscle Satellite Cultured Cells	--

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