Variant report

Variant	rs6740822
Chromosome Location	chr2:210363112-210363113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10173260	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10208979	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1031461	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10737939	0.93[ASN][1000 genomes]
rs10737940	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11686346	1.00[ASN][1000 genomes]
rs11687844	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12052799	0.94[ASN][1000 genomes]
rs12053460	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2123700	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2198475	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2198476	1.00[ASN][1000 genomes]
rs2198477	1.00[ASN][1000 genomes]
rs2198478	0.99[ASN][1000 genomes]
rs2219085	0.99[ASN][1000 genomes]
rs2365657	0.97[ASN][1000 genomes]
rs2365658	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs288046	0.94[ASN][1000 genomes]
rs288062	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs288064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs288065	0.98[ASN][1000 genomes]
rs288067	0.99[ASN][1000 genomes]
rs288068	0.99[ASN][1000 genomes]
rs2886435	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2886436	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4672554	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4673481	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4673482	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6435530	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6435531	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6728378	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6738205	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7559831	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7561678	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7562585	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7568354	0.94[ASN][1000 genomes]
rs7574854	0.98[ASN][1000 genomes]
rs7580512	0.93[ASN][1000 genomes]
rs7586196	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7593377	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7601095	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs852734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9288409	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs997109	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834518	chr2:210204958-210372744	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv834519	chr2:210271017-210400153	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210360000-210363200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:210360200-210363200	Weak transcription	Right Ventricle	heart
3	chr2:210360200-210366000	Weak transcription	Psoas Muscle	Psoas
4	chr2:210360200-210366400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:210360400-210363400	Weak transcription	Pancreas	Pancrea
6	chr2:210361200-210363200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:210361600-210363400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:210361800-210363400	Weak transcription	A549	lung
9	chr2:210361800-210376400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:210362000-210363600	Strong transcription	Brain Germinal Matrix	brain
11	chr2:210362000-210365000	Weak transcription	Fetal Heart	heart
12	chr2:210362400-210363200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:210362400-210363600	ZNF genes & repeats	Fetal Brain Female	brain
14	chr2:210362600-210363800	Weak transcription	HUVEC	blood vessel
15	chr2:210362800-210363600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
16	chr2:210362800-210363800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr2:210363000-210363200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
18	chr2:210363000-210363400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:210363000-210363600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr2:210363000-210363600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:210363000-210363800	Genic enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr2:210363000-210363800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:210363000-210363800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links