Variant report

Variant	rs6741014
Chromosome Location	chr2:10344465-10344466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10343918..10345880-chr2:10346091..10348518,2	MCF-7	breast:
2	chr2:10339278..10341450-chr2:10342848..10344717,2	K562	blood:
3	chr2:10343616..10346370-chr2:10368491..10370304,2	MCF-7	breast:
4	chr2:10344349..10346575-chr2:10349485..10351710,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10184516	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7558744	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7577583	0.95[CHD][hapmap]
rs887963	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873635	chr2:10286466-10344465	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv818977	chr2:10333767-10393038	Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv34981	chr2:10341468-10384302	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv35171	chr2:10341468-10384302	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10290200-10351400	Strong transcription	Dnd41	blood
2	chr2:10333000-10347000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr2:10335200-10348600	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:10336800-10344600	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:10337200-10349600	Weak transcription	Spleen	Spleen
6	chr2:10338600-10351200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr2:10339200-10345400	Weak transcription	Fetal Thymus	thymus
8	chr2:10339200-10345600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr2:10339400-10350600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:10339400-10362000	Weak transcription	Fetal Intestine Small	intestine
11	chr2:10341800-10354400	Weak transcription	HepG2	liver
12	chr2:10342200-10348600	Weak transcription	A549	lung
13	chr2:10342800-10344600	Enhancers	Fetal Brain Female	brain
14	chr2:10342800-10345400	Enhancers	Fetal Brain Male	brain
15	chr2:10343000-10344600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:10343000-10345200	Enhancers	NHDF-Ad	bronchial
17	chr2:10343000-10345600	Strong transcription	Thymus	Thymus
18	chr2:10343600-10360400	Weak transcription	HSMM	muscle
19	chr2:10344000-10344600	Enhancers	Brain Germinal Matrix	brain
20	chr2:10344000-10345600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:10344200-10345800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr2:10344200-10348200	Weak transcription	Fetal Muscle Leg	muscle
23	chr2:10344400-10345200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr2:10344400-10345200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr2:10344400-10345400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr2:10344400-10345400	Enhancers	NH-A	brain
27	chr2:10344400-10345800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr2:10344400-10345800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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