Variant report

Variant	rs6741761
Chromosome Location	chr2:182626761-182626762
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10167581	0.98[AFR][1000 genomes]
rs10169250	1.00[EUR][1000 genomes]
rs10171629	0.90[AFR][1000 genomes]
rs10203440	0.90[AFR][1000 genomes]
rs11885643	1.00[EUR][1000 genomes]
rs13384259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13391733	0.80[AFR][1000 genomes]
rs13395564	1.00[EUR][1000 genomes]
rs13396152	0.90[AFR][1000 genomes]
rs13401364	0.80[AFR][1000 genomes]
rs13404156	0.80[AFR][1000 genomes]
rs6433942	1.00[EUR][1000 genomes]
rs6757190	1.00[EUR][1000 genomes]
rs7582121	1.00[EUR][1000 genomes]
rs7600976	0.90[AFR][1000 genomes]
rs964700	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1001558	chr2:182590009-182732738	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:182616800-182631000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:182619800-182629000	Weak transcription	Stomach Mucosa	stomach
3	chr2:182624800-182627000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:182625000-182627000	Enhancers	Brain Hippocampus Middle	brain
5	chr2:182625200-182629800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:182625600-182628000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr2:182626000-182627800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:182626000-182628200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:182626200-182627000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:182626200-182627000	Enhancers	Brain Cingulate Gyrus	brain
11	chr2:182626200-182627200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr2:182626200-182627200	Enhancers	Brain Substantia Nigra	brain
13	chr2:182626200-182627400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr2:182626400-182626800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:182626600-182627400	Enhancers	HepG2	liver
16	chr2:182626600-182629000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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