Variant report

Variant	rs6741918
Chromosome Location	chr2:151125508-151125509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10165666	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11693655	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12692649	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4233802	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4402789	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4508619	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4563247	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4606957	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6748737	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7564257	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7608140	0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151113000-151138400	Weak transcription	Liver	Liver
2	chr2:151119400-151128600	Weak transcription	Aorta	Aorta
3	chr2:151121000-151128600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:151124600-151128600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:151124800-151128000	Weak transcription	HMEC	breast
6	chr2:151124800-151128400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:151125200-151127800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr2:151125200-151128000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:151125200-151128200	Weak transcription	NHEK	skin
10	chr2:151125200-151128600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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