Variant report

Variant	rs6742392
Chromosome Location	chr2:188902764-188902765
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11889532	1.00[AMR][1000 genomes]
rs11902822	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6730283	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533353	chr2:188498301-189024655	Weak transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv875597	chr2:188573244-188916290	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv584041	chr2:188644642-188928433	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv523293	chr2:188774681-188928433	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv875601	chr2:188871436-188934777	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:188892600-188911400	Weak transcription	Aorta	Aorta
2	chr2:188899600-188912400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr2:188900400-188903800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:188901400-188903400	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:188901800-188905600	Strong transcription	H9 Cell Line	embryonic stem cell
6	chr2:188901800-188907000	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:188901800-188908200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:188902000-188902800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr2:188902000-188906800	Strong transcription	HUES48 Cell Line	embryonic stem cell
10	chr2:188902200-188903600	Strong transcription	H1 Cell Line	embryonic stem cell
11	chr2:188902200-188903600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr2:188902200-188903800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr2:188902200-188905400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:188902600-188904200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr2:188902600-188905600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:188902600-188906800	Strong transcription	HUES6 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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