Variant report

Variant	rs6742728
Chromosome Location	chr2:73113601-73113602
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6730771	1.00[YRI][hapmap]
rs6754072	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834259	chr2:72941118-73114106	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv532723	chr2:73088191-73219259	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv3377861	chr2:73113469-73116017	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6742728	OR9A4	trans	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:73112800-73114000	Enhancers	Placenta	Placenta
2	chr2:73113200-73113800	Enhancers	Liver	Liver
3	chr2:73113400-73114000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:73113600-73113800	Enhancers	Brain Anterior Caudate	brain
5	chr2:73113600-73113800	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr2:73113600-73113800	Enhancers	Spleen	Spleen
7	chr2:73113600-73113800	Enhancers	A549	lung
8	chr2:73113600-73113800	Enhancers	NHEK	skin
9	chr2:73113600-73114000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:73113600-73114000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:73113600-73114000	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr2:73113600-73114000	Enhancers	Fetal Heart	heart
13	chr2:73113600-73114000	Bivalent Enhancer	Fetal Intestine Large	intestine
14	chr2:73113600-73114000	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr2:73113600-73114000	Enhancers	HMEC	breast
16	chr2:73113600-73114200	Flanking Active TSS	HepG2	liver
17	chr2:73113600-73114400	Flanking Active TSS	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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