Variant report

Variant	rs6742943
Chromosome Location	chr2:187168809-187168810
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:187168079..187170910-chr2:187226806..187228664,2	K562	blood:

Extended variants
information (count: 181 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:173)

rs_ID	r²[population]
rs10172511	0.93[ASN][1000 genomes]
rs10188807	0.96[ASN][1000 genomes]
rs10189971	0.92[ASN][1000 genomes]
rs10193268	0.93[ASN][1000 genomes]
rs10194541	0.93[ASN][1000 genomes]
rs10194719	0.93[ASN][1000 genomes]
rs10196208	0.89[ASN][1000 genomes]
rs10201768	0.85[ASN][1000 genomes]
rs10201874	0.90[ASN][1000 genomes]
rs10203879	0.93[ASN][1000 genomes]
rs10205506	0.92[ASN][1000 genomes]
rs10205705	0.92[ASN][1000 genomes]
rs10210844	0.85[ASN][1000 genomes]
rs1026118	0.90[ASN][1000 genomes]
rs10439308	0.95[ASN][1000 genomes]
rs10804003	0.80[ASN][1000 genomes]
rs10804004	0.87[ASN][1000 genomes]
rs10931239	0.93[ASN][1000 genomes]
rs10931242	0.90[ASN][1000 genomes]
rs11676936	0.92[ASN][1000 genomes]
rs11683595	0.91[ASN][1000 genomes]
rs11693737	0.89[ASN][1000 genomes]
rs11884786	0.88[ASN][1000 genomes]
rs11889909	0.92[ASN][1000 genomes]
rs12052331	0.96[ASN][1000 genomes]
rs12053380	0.89[ASN][1000 genomes]
rs12463831	0.96[ASN][1000 genomes]
rs12467212	0.89[ASN][1000 genomes]
rs12467891	0.87[ASN][1000 genomes]
rs12469301	0.91[ASN][1000 genomes]
rs12473542	0.93[ASN][1000 genomes]
rs12475522	0.89[ASN][1000 genomes]
rs12477683	0.93[ASN][1000 genomes]
rs12478370	0.86[ASN][1000 genomes]
rs12611673	0.87[ASN][1000 genomes]
rs12615503	0.96[ASN][1000 genomes]
rs12615675	0.82[ASN][1000 genomes]
rs12619990	0.90[ASN][1000 genomes]
rs12620626	0.96[ASN][1000 genomes]
rs12623611	0.87[ASN][1000 genomes]
rs12693440	0.88[ASN][1000 genomes]
rs12693444	0.92[ASN][1000 genomes]
rs12693447	0.90[ASN][1000 genomes]
rs12693448	0.92[ASN][1000 genomes]
rs12693449	0.90[ASN][1000 genomes]
rs13009502	0.83[ASN][1000 genomes]
rs13015996	0.87[ASN][1000 genomes]
rs13016181	0.87[ASN][1000 genomes]
rs13016273	0.84[ASN][1000 genomes]
rs13017706	0.82[ASN][1000 genomes]
rs13018467	0.87[ASN][1000 genomes]
rs13023992	0.91[ASN][1000 genomes]
rs13024310	0.87[ASN][1000 genomes]
rs13027135	0.93[ASN][1000 genomes]
rs13029473	0.86[ASN][1000 genomes]
rs13029980	0.83[ASN][1000 genomes]
rs13403118	0.88[ASN][1000 genomes]
rs13409734	0.96[ASN][1000 genomes]
rs13421394	0.91[ASN][1000 genomes]
rs13421948	0.96[ASN][1000 genomes]
rs13426333	0.94[ASN][1000 genomes]
rs1349154	0.92[ASN][1000 genomes]
rs1375321	0.92[ASN][1000 genomes]
rs1375324	0.93[ASN][1000 genomes]
rs1375325	0.93[ASN][1000 genomes]
rs1375327	0.93[ASN][1000 genomes]
rs1375328	0.93[ASN][1000 genomes]
rs1448851	0.92[ASN][1000 genomes]
rs1448852	0.92[ASN][1000 genomes]
rs1448854	0.92[ASN][1000 genomes]
rs1448856	0.87[ASN][1000 genomes]
rs1448858	0.87[ASN][1000 genomes]
rs1448860	0.92[ASN][1000 genomes]
rs1448861	0.93[ASN][1000 genomes]
rs1448863	0.85[ASN][1000 genomes]
rs1562646	0.90[ASN][1000 genomes]
rs1562647	0.90[ASN][1000 genomes]
rs16827561	0.86[ASN][1000 genomes]
rs1839193	0.82[ASN][1000 genomes]
rs1900835	0.87[ASN][1000 genomes]
rs1992930	0.88[ASN][1000 genomes]
rs2197816	0.92[ASN][1000 genomes]
rs2370667	0.93[ASN][1000 genomes]
rs2370675	0.86[ASN][1000 genomes]
rs2370691	0.92[ASN][1000 genomes]
rs2370692	0.90[ASN][1000 genomes]
rs28498768	0.96[ASN][1000 genomes]
rs2887819	0.93[ASN][1000 genomes]
rs3107167	0.96[ASN][1000 genomes]
rs3107177	0.92[ASN][1000 genomes]
rs3107406	0.94[ASN][1000 genomes]
rs3107414	0.95[ASN][1000 genomes]
rs3112322	0.88[ASN][1000 genomes]
rs34229945	0.93[ASN][1000 genomes]
rs35076657	0.82[ASN][1000 genomes]
rs35437667	0.86[ASN][1000 genomes]
rs4016824	0.89[ASN][1000 genomes]
rs4130801	0.93[ASN][1000 genomes]
rs4144824	0.88[ASN][1000 genomes]
rs4271735	0.84[ASN][1000 genomes]
rs4341896	0.87[ASN][1000 genomes]
rs4363995	0.81[ASN][1000 genomes]
rs4430906	0.91[ASN][1000 genomes]
rs4522568	0.94[ASN][1000 genomes]
rs4530331	0.95[ASN][1000 genomes]
rs4535008	0.91[ASN][1000 genomes]
rs4569437	0.91[ASN][1000 genomes]
rs4608482	0.83[ASN][1000 genomes]
rs4637073	0.92[ASN][1000 genomes]
rs4666701	0.93[ASN][1000 genomes]
rs4667079	0.96[ASN][1000 genomes]
rs4667080	0.96[ASN][1000 genomes]
rs4667081	0.90[ASN][1000 genomes]
rs4667086	0.90[ASN][1000 genomes]
rs4667089	0.88[ASN][1000 genomes]
rs4667090	0.82[ASN][1000 genomes]
rs5008098	0.95[ASN][1000 genomes]
rs56347348	0.89[ASN][1000 genomes]
rs56393956	0.96[ASN][1000 genomes]
rs56681734	0.96[ASN][1000 genomes]
rs56718299	0.96[ASN][1000 genomes]
rs56786415	0.95[ASN][1000 genomes]
rs57289110	0.96[ASN][1000 genomes]
rs58244659	0.96[ASN][1000 genomes]
rs58488407	0.95[ASN][1000 genomes]
rs58579412	0.96[ASN][1000 genomes]
rs58783284	0.96[ASN][1000 genomes]
rs59087873	0.95[ASN][1000 genomes]
rs59224241	0.96[ASN][1000 genomes]
rs59276018	0.96[ASN][1000 genomes]
rs59360834	0.93[ASN][1000 genomes]
rs60859807	0.96[ASN][1000 genomes]
rs61083860	0.95[ASN][1000 genomes]
rs61253791	0.96[ASN][1000 genomes]
rs6434170	0.93[ASN][1000 genomes]
rs6434171	0.92[ASN][1000 genomes]
rs66593320	0.96[ASN][1000 genomes]
rs6704957	0.89[ASN][1000 genomes]
rs6715735	0.91[ASN][1000 genomes]
rs6717965	0.93[ASN][1000 genomes]
rs6726048	0.87[ASN][1000 genomes]
rs6728734	0.93[ASN][1000 genomes]
rs6741525	0.96[ASN][1000 genomes]
rs6743356	0.91[ASN][1000 genomes]
rs6744814	0.96[ASN][1000 genomes]
rs6745187	0.96[ASN][1000 genomes]
rs6745873	0.93[ASN][1000 genomes]
rs6752407	0.85[ASN][1000 genomes]
rs6754898	0.96[ASN][1000 genomes]
rs6755955	0.93[ASN][1000 genomes]
rs6759502	0.85[ASN][1000 genomes]
rs6760230	0.96[ASN][1000 genomes]
rs67917059	0.95[ASN][1000 genomes]
rs716130	0.93[ASN][1000 genomes]
rs72907565	0.96[ASN][1000 genomes]
rs73035230	0.95[ASN][1000 genomes]
rs73035235	0.96[ASN][1000 genomes]
rs73035261	0.96[ASN][1000 genomes]
rs7558599	0.90[ASN][1000 genomes]
rs7560019	0.96[ASN][1000 genomes]
rs7571191	0.96[ASN][1000 genomes]
rs7571408	0.96[ASN][1000 genomes]
rs7579391	0.91[ASN][1000 genomes]
rs7580038	0.87[ASN][1000 genomes]
rs7586291	0.85[ASN][1000 genomes]
rs7586995	0.81[ASN][1000 genomes]
rs7587077	0.93[ASN][1000 genomes]
rs7587079	0.93[ASN][1000 genomes]
rs7599277	0.85[ASN][1000 genomes]
rs7602918	0.93[ASN][1000 genomes]
rs7606494	0.92[ASN][1000 genomes]
rs980540	0.92[ASN][1000 genomes]
rs9807987	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875545	chr2:186566024-187280164	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv817325	chr2:186625679-187200841	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv868949	chr2:186657142-187327560	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv932296	chr2:186737443-187265790	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1014726	chr2:187036909-187213113	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv536078	chr2:187036909-187213113	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1006411	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv536079	chr2:187150025-187291081	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6742943	ZC3H15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187163600-187170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:187168000-187172400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:187168000-187173000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:187168400-187169600	Enhancers	HepG2	liver
5	chr2:187168400-187172400	Weak transcription	NHEK	skin
6	chr2:187168800-187169000	Enhancers	Fetal Intestine Large	intestine
7	chr2:187168800-187170400	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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