Variant report

Variant	rs6743273
Chromosome Location	chr2:173542006-173542007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11902830	0.88[AFR][1000 genomes]
rs12052642	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12618102	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12622834	0.98[AFR][1000 genomes]
rs13427921	0.90[TSI][hapmap]
rs16860796	0.96[AFR][1000 genomes]
rs2054163	0.85[AFR][1000 genomes]
rs59103702	0.98[AFR][1000 genomes]
rs6716527	0.97[AFR][1000 genomes]
rs6757567	0.90[AFR][1000 genomes]
rs7590282	0.97[AFR][1000 genomes]
rs836599	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs836639	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173539600-173554200	Weak transcription	Primary T cells from cord blood	blood
2	chr2:173539800-173542200	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr2:173541400-173542400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:173541600-173542600	Enhancers	NHEK	skin
5	chr2:173541600-173543200	Enhancers	HMEC	breast
6	chr2:173541800-173542600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:173541800-173542600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:173541800-173542600	Enhancers	A549	lung
9	chr2:173541800-173543600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr2:173542000-173542400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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