Variant report

Variant	rs67434056
Chromosome Location	chr8:131118180-131118181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13252244	0.80[EUR][1000 genomes]
rs34014736	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34303787	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018045	chr8:130863644-131122644	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv612231	chr8:130868212-131132592	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv524349	chr8:130868363-131132592	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv465808	chr8:130963259-131118658	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv612232	chr8:130963259-131118658	Genic enhancers Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv869334	chr8:131025093-131651487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv915580	chr8:131025093-131667578	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv465810	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv612234	chr8:131039109-131331012	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
10	nsv533085	chr8:131042781-131755007	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:131076200-131170600	Weak transcription	Small Intestine	intestine
2	chr8:131091000-131120000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:131096600-131120000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:131101800-131121400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:131102000-131123000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr8:131103000-131122400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr8:131103400-131119000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr8:131103600-131118200	Weak transcription	GM12878-XiMat	blood
9	chr8:131103600-131121400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:131103600-131122400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:131103800-131120000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:131103800-131122000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:131103800-131122800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:131104200-131121400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr8:131104400-131120000	Weak transcription	Dnd41	blood
16	chr8:131104400-131120400	Weak transcription	Colonic Mucosa	Colon
17	chr8:131104400-131122600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr8:131104400-131122600	Weak transcription	Pancreas	Pancrea
19	chr8:131104400-131123600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:131104600-131120000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr8:131104600-131120200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr8:131104600-131120200	Weak transcription	Colon Smooth Muscle	Colon
23	chr8:131104600-131121600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr8:131104800-131118600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr8:131104800-131118800	Weak transcription	Fetal Thymus	thymus
26	chr8:131105000-131118800	Weak transcription	Primary T helper cells PMA-I stimulated	--
27	chr8:131105000-131119600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr8:131105000-131120000	Weak transcription	Fetal Lung	lung
29	chr8:131105000-131123600	Weak transcription	Fetal Kidney	kidney
30	chr8:131105600-131118400	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:131105800-131124000	Weak transcription	Fetal Brain Male	brain
32	chr8:131107400-131120000	Weak transcription	K562	blood
33	chr8:131107400-131122000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr8:131107600-131118200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr8:131107600-131118200	Weak transcription	HepG2	liver
36	chr8:131108600-131122200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:131108800-131118800	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr8:131109800-131118400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr8:131109800-131123800	Weak transcription	Gastric	stomach
40	chr8:131110000-131118200	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr8:131110000-131122000	Weak transcription	Esophagus	oesophagus
42	chr8:131112800-131118400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr8:131113000-131118600	Strong transcription	NH-A	brain
44	chr8:131113000-131142000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr8:131113400-131128200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr8:131114400-131138000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr8:131114600-131118200	Strong transcription	Adipose Nuclei	Adipose
48	chr8:131114600-131118600	Weak transcription	Primary B cells from cord blood	blood
49	chr8:131114600-131120000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr8:131114600-131137200	Strong transcription	A549	lung

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