Variant report

Variant rs6743902
Chromosome Location chr2:54720872-54720873
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54710600-54725000 Weak transcription H9 Cell Line embryonic stem cell
2 chr2:54710800-54729600 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr2:54711600-54724400 Weak transcription HSMMtube muscle
4 chr2:54711600-54726000 Weak transcription Fetal Muscle Trunk muscle
5 chr2:54711800-54721000 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr2:54711800-54726200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
7 chr2:54712000-54721000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr2:54712400-54727800 Weak transcription Placenta Amnion Placenta Amnion
9 chr2:54712400-54729400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
10 chr2:54712400-54737000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr2:54712600-54727800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr2:54714600-54724200 Weak transcription A549 lung
13 chr2:54715600-54728200 Weak transcription Brain Germinal Matrix brain
14 chr2:54715800-54722200 Weak transcription Spleen Spleen
15 chr2:54715800-54724600 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr2:54716000-54721000 Weak transcription Muscle Satellite Cultured Cells --
17 chr2:54716000-54721000 Weak transcription Osteobl bone
18 chr2:54716000-54730000 Weak transcription NH-A brain
19 chr2:54716200-54721000 Weak transcription Rectal Smooth Muscle rectum
20 chr2:54716200-54728600 Weak transcription Fetal Brain Female brain
21 chr2:54716400-54724200 Weak transcription Fetal Muscle Leg muscle
22 chr2:54716400-54724600 Weak transcription Fetal Adrenal Gland Adrenal Gland
23 chr2:54717000-54729800 Weak transcription Fetal Brain Male brain
24 chr2:54717800-54732800 Enhancers Brain Anterior Caudate brain
25 chr2:54718200-54723800 Weak transcription Brain Substantia Nigra brain
26 chr2:54718200-54724200 Weak transcription Brain Cingulate Gyrus brain
27 chr2:54718200-54725200 Weak transcription Pancreas Pancrea
28 chr2:54718200-54726800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
29 chr2:54718200-54727400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr2:54718400-54721800 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr2:54718400-54723800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
32 chr2:54718400-54723800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr2:54718600-54727000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr2:54719000-54722200 Weak transcription Brain Angular Gyrus brain
35 chr2:54719000-54724200 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr2:54719000-54725200 Weak transcription Skeletal Muscle Female skeletal muscle
37 chr2:54719000-54725800 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr2:54719000-54751800 Weak transcription Aorta Aorta
39 chr2:54719400-54726000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
40 chr2:54719600-54721000 Genic enhancers Left Ventricle heart
41 chr2:54719600-54721200 Strong transcription Fetal Stomach stomach
42 chr2:54719800-54721200 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
43 chr2:54719800-54723400 Weak transcription Brain Inferior Temporal Lobe brain
44 chr2:54719800-54724200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
45 chr2:54719800-54728000 Weak transcription Fetal Intestine Small intestine
46 chr2:54719800-54728200 Weak transcription Gastric stomach
47 chr2:54720000-54721000 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr2:54720000-54721000 Weak transcription Colon Smooth Muscle Colon
49 chr2:54720000-54721000 Weak transcription HepG2 liver
50 chr2:54720000-54721000 Weak transcription HSMM muscle

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