Variant report

Variant	rs6743905
Chromosome Location	chr2:56245578-56245579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10185410	1.00[AMR][1000 genomes]
rs10187691	1.00[AMR][1000 genomes]
rs10191821	1.00[AMR][1000 genomes]
rs10193578	1.00[AMR][1000 genomes]
rs10197914	1.00[AMR][1000 genomes]
rs10200020	1.00[AMR][1000 genomes]
rs10518798	0.95[YRI][hapmap]
rs13390181	1.00[AMR][1000 genomes]
rs13390742	1.00[AMR][1000 genomes]
rs13398296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13398763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13426058	1.00[AMR][1000 genomes]
rs17047345	1.00[AMR][1000 genomes]
rs2868442	1.00[AMR][1000 genomes]
rs6724301	1.00[AMR][1000 genomes]
rs6726939	1.00[AMR][1000 genomes]
rs73940374	1.00[AMR][1000 genomes]
rs73940376	1.00[AMR][1000 genomes]
rs73940377	1.00[AMR][1000 genomes]
rs73940379	1.00[AMR][1000 genomes]
rs7572112	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs7577815	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2757799	chr2:56178439-56472394	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
3	esv2759051	chr2:56178439-56472394	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
4	nsv520175	chr2:56228351-56331375	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56243200-56246400	Enhancers	HUVEC	blood vessel
2	chr2:56243400-56247000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:56243600-56247600	Weak transcription	A549	lung
4	chr2:56243600-56248200	Weak transcription	Fetal Kidney	kidney
5	chr2:56244800-56245600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr2:56244800-56246000	Enhancers	Hela-S3	cervix
7	chr2:56245400-56245600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:56245400-56245600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:56245400-56245600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr2:56245400-56245600	Enhancers	Adipose Nuclei	Adipose
11	chr2:56245400-56245600	Enhancers	Brain Germinal Matrix	brain
12	chr2:56245400-56245600	Flanking Active TSS	Brain Substantia Nigra	brain
13	chr2:56245400-56245600	Flanking Active TSS	Pancreas	Pancrea
14	chr2:56245400-56245800	Enhancers	Fetal Muscle Leg	muscle
15	chr2:56245400-56246000	Active TSS	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links