Variant report

Variant	rs6745267
Chromosome Location	chr2:40676123-40676124
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:40673684..40676134-chr2:40676375..40679373,3	MCF-7	breast:
2	chr2:40636692..40638934-chr2:40675253..40677147,2	K562	blood:
3	chr2:40440053..40440830-chr2:40675706..40676650,2	MCF-7	breast:
4	chr2:40675399..40676300-chr2:40781805..40782460,4	MCF-7	breast:
5	chr2:40675723..40677676-chr2:40685084..40687895,2	K562	blood:

Variant related genes	Relation type
ENSG00000183023	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12328630	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13422783	1.00[ASN][1000 genomes]
rs17025946	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17025948	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17039007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4245783	0.89[YRI][hapmap]
rs60409867	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73926212	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7576564	1.00[EUR][1000 genomes]
rs991938	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529606	chr2:40206280-40896881	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv873911	chr2:40423454-41161464	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2757794	chr2:40547947-40733776	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2759044	chr2:40547947-40733776	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv2700	chr2:40667461-40712805	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:40648200-40676400	Weak transcription	Fetal Kidney	kidney
2	chr2:40662600-40677200	Weak transcription	Fetal Muscle Leg	muscle
3	chr2:40663600-40677000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:40663600-40677000	Weak transcription	Aorta	Aorta
5	chr2:40663800-40677600	Weak transcription	HSMMtube	muscle
6	chr2:40666600-40676400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:40666600-40676600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:40666600-40677200	Weak transcription	Right Ventricle	heart
9	chr2:40667000-40676200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:40667000-40676400	Weak transcription	HMEC	breast
11	chr2:40668400-40676600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:40668600-40677200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr2:40669600-40676800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:40672200-40678200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr2:40672600-40676800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:40672800-40676800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr2:40673400-40677200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr2:40673600-40677000	Weak transcription	Fetal Stomach	stomach
19	chr2:40673600-40677200	Weak transcription	Placenta	Placenta
20	chr2:40673800-40676400	Weak transcription	Brain Germinal Matrix	brain
21	chr2:40673800-40676400	Weak transcription	Brain Hippocampus Middle	brain
22	chr2:40673800-40677000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:40673800-40677000	Weak transcription	Primary B cells from cord blood	blood
24	chr2:40673800-40677200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr2:40674000-40677200	Weak transcription	Left Ventricle	heart
26	chr2:40674000-40679600	Enhancers	Fetal Heart	heart
27	chr2:40674600-40677000	Weak transcription	Right Atrium	heart
28	chr2:40675200-40676200	Enhancers	Fetal Brain Male	brain
29	chr2:40675200-40676200	Enhancers	Stomach Smooth Muscle	stomach
30	chr2:40675200-40676400	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr2:40675200-40677000	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr2:40675200-40677000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr2:40675200-40677000	Enhancers	NHDF-Ad	bronchial
34	chr2:40675200-40680000	Active TSS	Brain Anterior Caudate	brain
35	chr2:40675400-40677800	Active TSS	Brain Angular Gyrus	brain
36	chr2:40675600-40676600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr2:40675600-40676800	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr2:40675600-40676800	Enhancers	Muscle Satellite Cultured Cells	--
39	chr2:40675600-40677000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr2:40675600-40677000	Enhancers	Rectal Smooth Muscle	rectum
41	chr2:40675600-40677000	Enhancers	Osteobl	bone
42	chr2:40675600-40677200	Enhancers	HSMM	muscle
43	chr2:40675600-40678000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr2:40675600-40680000	Active TSS	Fetal Brain Female	brain
45	chr2:40675800-40676400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr2:40675800-40676400	Weak transcription	NHLF	lung
47	chr2:40675800-40676600	Enhancers	Duodenum Smooth Muscle	Duodenum
48	chr2:40675800-40676800	Enhancers	Colon Smooth Muscle	Colon
49	chr2:40676000-40676400	Enhancers	Dnd41	blood

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