Variant report

Variant	rs6745453
Chromosome Location	chr2:38623850-38623851
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72897606	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916059	chr2:38332341-39119398	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	143 gene(s)	inside rSNPs	diseases
2	nsv9646	chr2:38358311-39082189	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:38605200-38624400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:38612200-38633200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:38620200-38625800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:38620600-38624200	Enhancers	HMEC	breast
5	chr2:38621200-38624600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:38622200-38626600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:38622600-38624000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr2:38622800-38624000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr2:38623000-38624800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:38623800-38625200	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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