Variant report

Variant	rs6745582
Chromosome Location	chr2:56768605-56768606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10164491	0.81[EUR][1000 genomes]
rs10165392	0.92[EUR][1000 genomes]
rs10175426	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10187925	0.81[EUR][1000 genomes]
rs10208385	0.94[EUR][1000 genomes]
rs10210898	0.93[EUR][1000 genomes]
rs10865295	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11125636	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11125642	0.91[EUR][1000 genomes]
rs1156671	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11694653	0.95[EUR][1000 genomes]
rs11890368	0.94[EUR][1000 genomes]
rs12470157	0.95[EUR][1000 genomes]
rs12471657	0.95[EUR][1000 genomes]
rs13401378	0.93[EUR][1000 genomes]
rs13403703	0.81[EUR][1000 genomes]
rs13411277	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17048202	0.91[EUR][1000 genomes]
rs1991185	0.95[EUR][1000 genomes]
rs1991186	0.92[EUR][1000 genomes]
rs1991188	0.95[EUR][1000 genomes]
rs2033016	0.91[EUR][1000 genomes]
rs2033017	0.92[EUR][1000 genomes]
rs2033018	0.93[EUR][1000 genomes]
rs2081426	0.93[EUR][1000 genomes]
rs2112026	0.81[EUR][1000 genomes]
rs2870064	0.90[EUR][1000 genomes]
rs2870065	0.94[EUR][1000 genomes]
rs3948576	0.81[EUR][1000 genomes]
rs4365495	0.94[EUR][1000 genomes]
rs4395277	0.92[EUR][1000 genomes]
rs4521082	0.92[EUR][1000 genomes]
rs4671286	0.95[EUR][1000 genomes]
rs4672136	0.95[EUR][1000 genomes]
rs4672138	0.95[EUR][1000 genomes]
rs4672139	0.94[EUR][1000 genomes]
rs4672140	0.93[EUR][1000 genomes]
rs4672142	0.86[EUR][1000 genomes]
rs55889936	0.91[EUR][1000 genomes]
rs56191705	0.89[EUR][1000 genomes]
rs57457595	0.81[EUR][1000 genomes]
rs60639564	0.80[EUR][1000 genomes]
rs61403966	0.94[EUR][1000 genomes]
rs62160711	0.95[EUR][1000 genomes]
rs62160712	0.95[EUR][1000 genomes]
rs62160714	0.93[EUR][1000 genomes]
rs62161431	0.81[EUR][1000 genomes]
rs62161433	0.81[EUR][1000 genomes]
rs62161434	0.81[EUR][1000 genomes]
rs62161435	0.81[EUR][1000 genomes]
rs62161436	0.81[EUR][1000 genomes]
rs66532230	0.80[EUR][1000 genomes]
rs6708114	0.86[EUR][1000 genomes]
rs6731016	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6731142	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs68044837	0.81[EUR][1000 genomes]
rs68152617	0.81[EUR][1000 genomes]
rs7564662	0.95[EUR][1000 genomes]
rs7571779	0.92[EUR][1000 genomes]
rs7593494	0.94[EUR][1000 genomes]
rs7598711	0.90[EUR][1000 genomes]
rs9309284	0.92[EUR][1000 genomes]
rs9309285	0.92[EUR][1000 genomes]
rs965946	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874172	chr2:56638856-56811749	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757800	chr2:56659685-56851198	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759052	chr2:56659685-56851198	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2752438	chr2:56700945-56788111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv582049	chr2:56702495-56787100	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv582050	chr2:56702495-56854346	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2756921	chr2:56706672-56811290	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv582051	chr2:56706758-56902709	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv874175	chr2:56731966-56821883	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv874176	chr2:56736097-56821883	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv874177	chr2:56739650-56821883	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv874178	chr2:56739650-56839139	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	esv35146	chr2:56741749-56811290	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv817973	chr2:56743435-56817927	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv1005729	chr2:56750209-56778009	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1005547	chr2:56751574-56887287	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1012596	chr2:56761303-56916336	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv535725	chr2:56761303-56916336	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
20	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1009860	chr2:56768276-56896971	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56767600-56768800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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