Variant report

Variant	rs6745725
Chromosome Location	chr2:172454933-172454934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172454209..172457044-chr2:172571141..172573301,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000077380	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10185715	0.83[ASN][1000 genomes]
rs10211146	0.80[ASN][1000 genomes]
rs10221787	0.81[ASN][1000 genomes]
rs10432421	0.80[ASN][1000 genomes]
rs10432422	0.80[ASN][1000 genomes]
rs10432469	0.81[ASN][1000 genomes]
rs10432470	0.81[ASN][1000 genomes]
rs10432472	0.80[ASN][1000 genomes]
rs10432473	0.81[ASN][1000 genomes]
rs10930485	0.85[ASN][1000 genomes]
rs10930486	0.81[ASN][1000 genomes]
rs11680862	0.85[ASN][1000 genomes]
rs11680897	0.85[ASN][1000 genomes]
rs11683752	0.82[ASN][1000 genomes]
rs11683762	0.90[CHB][hapmap];0.88[CHD][hapmap];0.84[ASN][1000 genomes]
rs11686621	0.85[ASN][1000 genomes]
rs11689637	0.84[ASN][1000 genomes]
rs12472229	0.81[ASN][1000 genomes]
rs12476299	0.82[ASN][1000 genomes]
rs12996145	0.84[CHB][hapmap];0.88[CHD][hapmap];0.86[JPT][hapmap]
rs13024519	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs13025303	0.84[ASN][1000 genomes]
rs1473995	0.90[CHB][hapmap];0.85[CHD][hapmap];0.81[ASN][1000 genomes]
rs1554157	0.80[ASN][1000 genomes]
rs1554158	0.80[ASN][1000 genomes]
rs1606926	0.82[ASN][1000 genomes]
rs1807872	0.83[ASN][1000 genomes]
rs1969271	0.80[ASN][1000 genomes]
rs2037160	0.82[ASN][1000 genomes]
rs2176150	0.80[ASN][1000 genomes]
rs28893802	0.80[ASN][1000 genomes]
rs4265979	0.80[ASN][1000 genomes]
rs4667691	0.87[ASN][1000 genomes]
rs4668393	0.84[ASN][1000 genomes]
rs4668394	0.95[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap]
rs4668395	0.80[ASN][1000 genomes]
rs57833883	0.81[EUR][1000 genomes]
rs6433301	0.81[ASN][1000 genomes]
rs6433302	0.80[ASN][1000 genomes]
rs6711201	0.80[ASN][1000 genomes]
rs6718546	0.80[ASN][1000 genomes]
rs6723896	0.81[ASN][1000 genomes]
rs6725338	0.80[ASN][1000 genomes]
rs6754595	0.80[ASN][1000 genomes]
rs7562302	0.80[ASN][1000 genomes]
rs7571192	0.80[ASN][1000 genomes]
rs7575168	0.84[ASN][1000 genomes]
rs9287946	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv997638	chr2:172442205-172560406	Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
3	nsv525490	chr2:172453700-172454933	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172452800-172455600	Weak transcription	HMEC	breast
2	chr2:172453000-172455200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:172453000-172455600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:172453000-172455600	Weak transcription	A549	lung
5	chr2:172453000-172455800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:172453200-172455000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:172453200-172455600	Weak transcription	NHDF-Ad	bronchial
8	chr2:172453200-172455800	Weak transcription	NHEK	skin

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