Variant report

Variant	rs67462049
Chromosome Location	chr7:109277566-109277567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12537202	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs12705622	0.83[AMR][1000 genomes]
rs12705624	0.83[AMR][1000 genomes]
rs12705625	0.82[AMR][1000 genomes]
rs12705626	0.81[AMR][1000 genomes]
rs12705627	0.83[AMR][1000 genomes]
rs13233013	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs13233353	0.86[AMR][1000 genomes]
rs13236909	0.83[AMR][1000 genomes]
rs13241733	0.80[AMR][1000 genomes]
rs13241802	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13242207	0.86[AMR][1000 genomes]
rs13242214	0.83[AMR][1000 genomes]
rs13242499	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs13243043	0.84[AFR][1000 genomes]
rs13245102	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13245258	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs13245970	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2090430	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs35109891	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs35583729	0.85[AFR][1000 genomes]
rs55873142	0.84[AMR][1000 genomes]
rs6466289	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6949527	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6951916	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs6975819	0.81[AMR][1000 genomes]
rs6976113	0.80[AMR][1000 genomes]
rs7349968	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7350020	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7784076	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7784378	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7800655	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023379	chr7:109003574-109355234	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv608079	chr7:109098364-109862289	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1017184	chr7:109240101-109350011	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:109277000-109278000	Enhancers	Fetal Lung	lung
2	chr7:109277000-109280800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:109277400-109278400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:109277400-109278800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr7:109277400-109278800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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