Variant report

Variant	rs6746695
Chromosome Location	chr2:46748066-46748067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:46747246..46749675-chr2:46752290..46754206,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11125078	1.00[CEU][hapmap]
rs11125081	0.82[ASW][hapmap];0.87[YRI][hapmap]
rs12612916	1.00[CEU][hapmap]
rs12613088	1.00[CEU][hapmap]
rs12619696	1.00[CEU][hapmap]
rs12621486	1.00[CEU][hapmap]
rs1551123	1.00[CEU][hapmap]
rs1562454	1.00[CEU][hapmap]
rs2276556	1.00[CEU][hapmap]
rs41281471	1.00[EUR][1000 genomes]
rs4952826	1.00[CEU][hapmap]
rs4952827	1.00[CEU][hapmap]
rs60426488	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60926335	1.00[EUR][1000 genomes]
rs6714240	1.00[CEU][hapmap]
rs6741555	1.00[EUR][1000 genomes]
rs72875623	0.83[AMR][1000 genomes]
rs72875672	1.00[EUR][1000 genomes]
rs7573688	1.00[CEU][hapmap]
rs7574467	1.00[CEU][hapmap]
rs7595513	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757795	chr2:46532812-46874151	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759046	chr2:46532812-46874151	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv34650	chr2:46605659-46818992	Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	esv2756919	chr2:46614235-46756431	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv437435	chr2:46636967-46763587	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
6	esv34937	chr2:46651624-46818586	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv1014425	chr2:46670179-47033417	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv535678	chr2:46670179-47033417	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv873996	chr2:46670941-47065227	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv1009735	chr2:46724523-46913152	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:46733800-46753000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:46739600-46755000	Weak transcription	Aorta	Aorta
3	chr2:46743400-46758400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:46744800-46761800	Weak transcription	A549	lung
5	chr2:46745800-46748400	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr2:46745800-46748600	Enhancers	Adipose Nuclei	Adipose
7	chr2:46746000-46749400	Enhancers	Fetal Lung	lung
8	chr2:46746000-46749400	Enhancers	Fetal Muscle Trunk	muscle
9	chr2:46746000-46749400	Enhancers	Fetal Muscle Leg	muscle
10	chr2:46746000-46749400	Enhancers	Placenta	Placenta
11	chr2:46746000-46749400	Enhancers	Fetal Stomach	stomach
12	chr2:46746200-46748400	Enhancers	Lung	lung
13	chr2:46746200-46748800	Enhancers	Left Ventricle	heart
14	chr2:46746400-46748800	Enhancers	Ovary	ovary
15	chr2:46746400-46762800	Weak transcription	Liver	Liver
16	chr2:46746600-46749000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:46746800-46748800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:46747000-46748800	Enhancers	HSMMtube	muscle
19	chr2:46747200-46748800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr2:46747400-46748200	Weak transcription	NHDF-Ad	bronchial
21	chr2:46747400-46748400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr2:46747400-46748800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr2:46747400-46748800	Enhancers	NHLF	lung
24	chr2:46747600-46748400	Enhancers	Right Ventricle	heart
25	chr2:46747600-46748800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:46747600-46749000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr2:46747600-46749400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr2:46747800-46748200	Enhancers	Rectal Smooth Muscle	rectum
29	chr2:46747800-46748800	Enhancers	Colon Smooth Muscle	Colon
30	chr2:46747800-46748800	Enhancers	HSMM	muscle
31	chr2:46747800-46749400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr2:46747800-46766800	Weak transcription	Stomach Smooth Muscle	stomach
33	chr2:46748000-46748600	Enhancers	Rectal Mucosa Donor 29	rectum

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