Variant report

Variant	rs6747775
Chromosome Location	chr2:172432759-172432760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172424954..172426937-chr2:172431853..172433681,2	MCF-7	breast:
2	chr2:172432492..172434881-chr2:172445947..172448436,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10211146	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10221787	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10432471	0.88[AFR][1000 genomes]
rs10930485	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11680862	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11680897	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11683752	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11683762	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11686621	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11689452	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11689637	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12472229	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12476299	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12996145	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13002792	0.82[ASN][1000 genomes]
rs13024519	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13025303	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1473995	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1807872	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1996268	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2884028	0.85[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs4667691	0.86[ASN][1000 genomes]
rs4668391	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4668392	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4668393	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4668396	0.82[AFR][1000 genomes]
rs6711201	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs908371	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832950	chr2:172283513-172488111	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6747775	METTL8	cis	Esophagus Muscularis	GTEx
rs6747775	CYBRD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172431400-172434800	Weak transcription	K562	blood

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