Variant report

Variant	rs67479305
Chromosome Location	chr7:28033714-28033715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr7:28033659-28035328	SK-N-SH	brain:	n/a	chr7:28034412-28034423 chr7:28033948-28033957 chr7:28034414-28034421 chr7:28034414-28034423 chr7:28034379-28034388 chr7:28035167-28035179

Variant related genes	Relation type
JAZF1	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10486570	0.81[EUR][1000 genomes]
rs10951189	0.90[ASN][1000 genomes]
rs12537454	0.86[ASN][1000 genomes]
rs12537684	0.87[ASN][1000 genomes]
rs12671110	0.89[ASN][1000 genomes]
rs12671522	0.88[ASN][1000 genomes]
rs35846584	0.88[ASN][1000 genomes]
rs4308621	0.95[ASN][1000 genomes]
rs4357200	0.97[ASN][1000 genomes]
rs4365989	0.90[ASN][1000 genomes]
rs4422694	0.90[ASN][1000 genomes]
rs4492256	0.97[ASN][1000 genomes]
rs57551874	0.90[ASN][1000 genomes]
rs66642060	0.95[ASN][1000 genomes]
rs6965213	0.87[ASN][1000 genomes]
rs73089188	0.88[ASN][1000 genomes]
rs73089199	0.81[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:28002800-28034600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:28013400-28034200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:28017600-28042400	Weak transcription	Aorta	Aorta
4	chr7:28022400-28036200	Weak transcription	Lung	lung
5	chr7:28027200-28045800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:28027800-28039400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:28029400-28034400	Weak transcription	Osteobl	bone
8	chr7:28030600-28038600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr7:28031000-28034200	Weak transcription	NH-A	brain
10	chr7:28031000-28044800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr7:28031000-28044800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr7:28031200-28034600	Enhancers	Brain Substantia Nigra	brain
13	chr7:28031200-28035000	Enhancers	Brain Hippocampus Middle	brain
14	chr7:28031200-28040200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:28031200-28054000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr7:28031600-28035600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:28031600-28039400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:28031800-28035600	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr7:28031800-28035800	Enhancers	NHDF-Ad	bronchial
20	chr7:28032000-28045000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr7:28032400-28034200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr7:28032400-28036400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr7:28032600-28035600	Weak transcription	Fetal Stomach	stomach
24	chr7:28032600-28041600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr7:28032800-28034200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr7:28032800-28039000	Enhancers	Brain Angular Gyrus	brain
27	chr7:28033000-28034000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr7:28033000-28035200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:28033000-28035400	Weak transcription	Left Ventricle	heart
30	chr7:28033000-28044600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
31	chr7:28033000-28049800	Weak transcription	Pancreas	Pancrea
32	chr7:28033000-28054400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:28033200-28034200	Weak transcription	Fetal Muscle Leg	muscle
34	chr7:28033200-28034200	Weak transcription	Rectal Smooth Muscle	rectum
35	chr7:28033200-28035400	Weak transcription	Primary B cells from cord blood	blood
36	chr7:28033200-28039800	Weak transcription	Ovary	ovary
37	chr7:28033200-28040000	Enhancers	Fetal Heart	heart
38	chr7:28033200-28057000	Weak transcription	HMEC	breast
39	chr7:28033400-28034400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr7:28033400-28034400	Weak transcription	Colon Smooth Muscle	Colon
41	chr7:28033400-28034400	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr7:28033400-28035400	Weak transcription	Right Atrium	heart
43	chr7:28033400-28035600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr7:28033400-28041200	Weak transcription	Psoas Muscle	Psoas
45	chr7:28033400-28054200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr7:28033600-28034000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:28033600-28034000	Weak transcription	Adipose Nuclei	Adipose
48	chr7:28033600-28034000	Weak transcription	Brain Anterior Caudate	brain
49	chr7:28033600-28034000	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr7:28033600-28036800	Weak transcription	Brain Inferior Temporal Lobe	brain

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