Variant report

Variant	rs6748169
Chromosome Location	chr2:206424405-206424406
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2878751	0.82[AFR][1000 genomes]
rs6743334	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv10162	chr2:206272092-206525287	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv19770	chr2:206283097-206671319	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv2751840	chr2:206314671-206512921	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1007821	chr2:206333129-206465451	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv584245	chr2:206346410-206464465	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206405000-206446600	Weak transcription	Ovary	ovary
2	chr2:206405200-206430600	Weak transcription	Adipose Nuclei	Adipose
3	chr2:206405600-206435400	Weak transcription	Fetal Stomach	stomach
4	chr2:206405600-206445000	Weak transcription	HSMMtube	muscle
5	chr2:206409000-206431200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:206410000-206427400	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:206411000-206439000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:206415400-206425400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:206418600-206426200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr2:206418600-206439000	Weak transcription	Pancreas	Pancrea
11	chr2:206421600-206431000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr2:206421800-206426400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr2:206422200-206424600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr2:206422200-206424600	Weak transcription	Fetal Intestine Large	intestine
15	chr2:206422200-206430200	Weak transcription	Osteobl	bone
16	chr2:206422400-206464600	Weak transcription	Aorta	Aorta
17	chr2:206422600-206436000	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:206423000-206425200	Weak transcription	Fetal Intestine Small	intestine
19	chr2:206423000-206425200	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr2:206423200-206431000	Weak transcription	Stomach Smooth Muscle	stomach

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