Variant report

Variant	rs6748752
Chromosome Location	chr2:111612012-111612013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:111569200..111569886-chr2:111611955..111612624,2	MCF-7	breast:
2	chr2:111603779..111605764-chr2:111610713..111613145,2	K562	blood:
3	chr2:111611685..111612458-chr2:111874292..111875234,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13017495	1.00[EUR][1000 genomes]
rs17524344	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34918196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35174008	0.96[EUR][1000 genomes]
rs35595659	1.00[EUR][1000 genomes]
rs35723285	1.00[EUR][1000 genomes]
rs6736351	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71431125	1.00[EUR][1000 genomes]
rs74182834	1.00[EUR][1000 genomes]
rs74182835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7558720	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs7596265	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874838	chr2:111376870-112046226	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv874839	chr2:111400934-111868010	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1008758	chr2:111415136-111626467	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv535890	chr2:111415136-111626467	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv997829	chr2:111486961-111780537	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv834330	chr2:111593290-111789447	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv874840	chr2:111605245-111695479	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1004949	chr2:111607532-111780719	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1002568	chr2:111607532-111781442	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1005665	chr2:111610107-111762039	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv535892	chr2:111610107-111762039	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:111604800-111615800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr2:111608000-111618800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr2:111608200-111613000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr2:111608400-111613400	Enhancers	Fetal Thymus	thymus
5	chr2:111608600-111612400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr2:111608600-111612600	Enhancers	Primary T cells fromperipheralblood	blood
7	chr2:111608600-111612600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr2:111609000-111612800	Enhancers	Primary T cells from cord blood	blood
9	chr2:111609200-111612400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr2:111609400-111612800	Enhancers	Thymus	Thymus
11	chr2:111610600-111623600	Weak transcription	Spleen	Spleen
12	chr2:111610800-111616400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr2:111611000-111612400	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr2:111611000-111615600	Enhancers	Dnd41	blood
15	chr2:111611000-111615800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr2:111611200-111612600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr2:111611200-111612800	Enhancers	GM12878-XiMat	blood
18	chr2:111611400-111612400	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr2:111611400-111613000	Enhancers	Primary B cells from peripheral blood	blood
20	chr2:111611600-111612200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr2:111611600-111612400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr2:111611600-111612400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr2:111611600-111612400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr2:111611600-111612400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr2:111611600-111612400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:111611600-111612600	Enhancers	H9 Cell Line	embryonic stem cell
27	chr2:111611600-111612600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr2:111611600-111613400	Enhancers	Primary B cells from cord blood	blood
29	chr2:111611600-111615800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr2:111611800-111612400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr2:111611800-111615600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr2:111611800-111615600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr2:111611800-111615600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr2:111612000-111612400	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr2:111612000-111612600	Enhancers	HepG2	liver
36	chr2:111612000-111614800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr2:111612000-111616000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links