Variant report

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10805206	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10805207	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938718	0.85[ASN][1000 genomes]
rs11722806	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11734531	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12498304	0.88[EUR][1000 genomes]
rs12642551	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28636730	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3103098	0.88[ASN][1000 genomes]
rs6447877	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7665475	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv4224	chr4:8503727-8546462	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv878611	chr4:8512889-8534283	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8509000-8519200	Weak transcription	Brain Germinal Matrix	brain
2	chr4:8512200-8519200	Weak transcription	Spleen	Spleen
3	chr4:8514200-8520200	Enhancers	HSMMtube	muscle
4	chr4:8514600-8520000	Enhancers	Placenta	Placenta
5	chr4:8515600-8520400	Enhancers	NHDF-Ad	bronchial
6	chr4:8516400-8518800	Enhancers	Fetal Muscle Trunk	muscle
7	chr4:8516400-8520200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr4:8516600-8520200	Enhancers	Fetal Muscle Leg	muscle
9	chr4:8516800-8520000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:8517000-8519000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:8517400-8520000	Enhancers	NHLF	lung
12	chr4:8517800-8518600	Weak transcription	Adipose Nuclei	Adipose
13	chr4:8517800-8519800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:8517800-8520200	Enhancers	Ovary	ovary
15	chr4:8518000-8519800	Enhancers	HSMM	muscle
16	chr4:8518200-8519200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:8518200-8519400	Enhancers	Osteobl	bone
18	chr4:8518400-8519400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:8518400-8519600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr4:8518400-8520200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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