Variant report

Variant	rs6750068
Chromosome Location	chr2:187712724-187712725
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10931257	0.96[ASN][1000 genomes]
rs11690816	0.85[EUR][1000 genomes]
rs12612668	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12616053	0.89[ASN][1000 genomes]
rs1451557	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1901342	0.81[ASN][1000 genomes]
rs2122870	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3100021	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3100022	0.81[ASN][1000 genomes]
rs3100041	0.84[ASN][1000 genomes]
rs3114921	0.81[ASN][1000 genomes]
rs3114950	0.81[ASN][1000 genomes]
rs3114951	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56201830	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6705578	0.81[ASN][1000 genomes]
rs6734301	0.81[ASN][1000 genomes]
rs6757716	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73979373	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7559533	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187706800-187713400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:187707400-187712800	Weak transcription	NHLF	lung
3	chr2:187708400-187712800	Weak transcription	NHDF-Ad	bronchial
4	chr2:187708400-187713200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:187708400-187713400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:187708600-187713200	Weak transcription	Osteobl	bone
7	chr2:187711400-187713000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr2:187711400-187713000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr2:187712600-187712800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr2:187712600-187713000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:187712600-187713000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:187712600-187713200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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