Variant report
Variant | rs6750576 |
---|---|
Chromosome Location | chr2:210027764-210027765 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10173917 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs10176264 | 0.87[ASN][1000 genomes] |
rs10179445 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10182757 | 0.87[ASN][1000 genomes] |
rs10186025 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs10202821 | 0.95[ASN][1000 genomes] |
rs10497918 | 0.87[AMR][1000 genomes];0.86[ASN][1000 genomes] |
rs10497919 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs10497920 | 0.84[ASN][1000 genomes] |
rs11900049 | 0.82[ASN][1000 genomes] |
rs12694156 | 0.89[ASN][1000 genomes] |
rs12694157 | 0.85[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs12694159 | 0.87[ASN][1000 genomes] |
rs12694160 | 0.87[ASN][1000 genomes] |
rs12694162 | 0.86[ASN][1000 genomes] |
rs12694163 | 0.84[ASN][1000 genomes] |
rs12694164 | 0.84[ASN][1000 genomes] |
rs12694166 | 0.83[ASN][1000 genomes] |
rs13000497 | 0.84[ASN][1000 genomes] |
rs13015842 | 0.86[ASN][1000 genomes] |
rs13026809 | 0.84[ASN][1000 genomes] |
rs13388501 | 0.82[ASN][1000 genomes] |
rs13388592 | 0.83[ASN][1000 genomes] |
rs13390342 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs13391201 | 0.83[ASN][1000 genomes] |
rs13391946 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs13392114 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs13395229 | 0.82[AFR][1000 genomes];0.98[ASN][1000 genomes] |
rs13398502 | 0.87[ASN][1000 genomes] |
rs13405413 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs13418760 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs13423668 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs13425311 | 0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs1439741 | 0.87[ASN][1000 genomes] |
rs1439743 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1530132 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs1530133 | 0.89[ASN][1000 genomes] |
rs1583758 | 0.86[ASN][1000 genomes] |
rs1595737 | 0.87[ASN][1000 genomes] |
rs1595738 | 0.89[ASN][1000 genomes] |
rs16842610 | 0.82[ASN][1000 genomes] |
rs1837431 | 0.89[ASN][1000 genomes] |
rs1898943 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2043915 | 1.00[ASN][1000 genomes] |
rs2043916 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2043917 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs2119038 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2119039 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2119041 | 0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs34003755 | 0.87[ASN][1000 genomes] |
rs34282948 | 0.87[ASN][1000 genomes] |
rs34590389 | 0.87[ASN][1000 genomes] |
rs34867362 | 0.87[ASN][1000 genomes] |
rs4332863 | 0.89[ASN][1000 genomes] |
rs4602158 | 0.87[ASN][1000 genomes] |
rs6435517 | 0.89[ASN][1000 genomes] |
rs66489564 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs6707382 | 0.87[ASN][1000 genomes] |
rs6707503 | 0.86[ASN][1000 genomes] |
rs6717755 | 0.87[ASN][1000 genomes] |
rs6718580 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs6727838 | 0.89[ASN][1000 genomes] |
rs6733492 | 0.87[ASN][1000 genomes] |
rs6740295 | 0.87[ASN][1000 genomes] |
rs6745027 | 0.81[ASN][1000 genomes] |
rs6756445 | 0.89[ASN][1000 genomes] |
rs6757269 | 0.81[ASN][1000 genomes] |
rs7560902 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7563326 | 0.86[ASN][1000 genomes] |
rs7563731 | 0.87[ASN][1000 genomes] |
rs7571546 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs7581212 | 0.87[ASN][1000 genomes] |
rs7586718 | 0.87[ASN][1000 genomes] |
rs7587994 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7593117 | 0.87[ASN][1000 genomes] |
rs7593829 | 0.87[ASN][1000 genomes] |
rs7598051 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1012184 | chr2:209755847-210049331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
2 | nsv536131 | chr2:209755847-210049331 | Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
3 | nsv1009924 | chr2:209805661-210042572 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
4 | nsv875761 | chr2:209912108-210222004 | Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
5 | nsv1000214 | chr2:209987607-210308626 | Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
6 | nsv536133 | chr2:209987607-210308626 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
7 | nsv875762 | chr2:209992353-210036655 | Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv875763 | chr2:210000582-210036655 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:210024400-210028200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
2 | chr2:210026000-210029800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |