Variant report

Variant	rs67530239
Chromosome Location	chr11:15385104-15385105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10832408	0.80[AFR][1000 genomes]
rs59742403	1.00[ASN][1000 genomes]
rs73414842	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73414880	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73414899	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73416808	1.00[ASN][1000 genomes]
rs73416847	0.95[AFR][1000 genomes]
rs73416853	0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7930357	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830370	chr11:15142247-15444094	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv832072	chr11:15226843-15392190	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1044103	chr11:15345545-15390081	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15364600-15386000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:15380800-15385200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:15383600-15386400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:15384600-15385200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:15385000-15388800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links