Variant report

Variant	rs67539223
Chromosome Location	chr10:91316473-91316474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1556610	0.82[EUR][1000 genomes]
rs60158951	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv1041964	chr10:90861380-91378356	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:91313600-91324600	Weak transcription	Aorta	Aorta
2	chr10:91314400-91319800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:91314600-91324600	Weak transcription	Pancreas	Pancrea
4	chr10:91314800-91317200	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:91315600-91316600	Enhancers	HSMM	muscle
6	chr10:91315800-91318400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr10:91316000-91316600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:91316000-91316600	Enhancers	A549	lung
9	chr10:91316200-91316600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:91316200-91316600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:91316200-91316600	Enhancers	Osteobl	bone
12	chr10:91316400-91316600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:91316400-91316600	Enhancers	NH-A	brain
14	chr10:91316400-91316600	Enhancers	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links