Variant report

Variant	rs6754197
Chromosome Location	chr2:179194606-179194607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11886815	1.00[YRI][hapmap]
rs11890678	1.00[YRI][hapmap]
rs13382421	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv834466	chr2:179140792-179284778	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179164600-179200800	Weak transcription	Aorta	Aorta
2	chr2:179176200-179198000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr2:179183800-179247800	Weak transcription	Psoas Muscle	Psoas
4	chr2:179185400-179198200	Weak transcription	Fetal Lung	lung
5	chr2:179186000-179195000	Weak transcription	Liver	Liver
6	chr2:179188800-179195000	Weak transcription	Brain Hippocampus Middle	brain
7	chr2:179189200-179196800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr2:179189200-179201200	Weak transcription	Ovary	ovary
9	chr2:179189400-179201200	Weak transcription	Fetal Brain Male	brain
10	chr2:179189800-179217000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr2:179190600-179195800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:179192600-179198600	Weak transcription	Fetal Muscle Leg	muscle
13	chr2:179192600-179200600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:179193000-179195200	Weak transcription	Brain Angular Gyrus	brain
15	chr2:179193000-179195200	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:179193000-179196200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr2:179193000-179201400	Weak transcription	NH-A	brain
18	chr2:179193000-179201800	Weak transcription	Fetal Kidney	kidney
19	chr2:179193000-179214600	Weak transcription	Fetal Intestine Large	intestine
20	chr2:179193200-179194800	Weak transcription	HepG2	liver
21	chr2:179193200-179199800	Enhancers	HSMMtube	muscle
22	chr2:179193200-179201000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:179193200-179201400	Weak transcription	Fetal Brain Female	brain
24	chr2:179193200-179210400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:179193200-179216200	Weak transcription	Adipose Nuclei	Adipose
26	chr2:179193400-179203400	Weak transcription	Fetal Intestine Small	intestine
27	chr2:179193400-179204800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr2:179193400-179215000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr2:179193600-179196600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr2:179194000-179195000	Weak transcription	HSMM	muscle
31	chr2:179194600-179229400	Weak transcription	K562	blood

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