Variant report

Variant	rs6755382
Chromosome Location	chr2:178529319-178529320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:178521915..178523985-chr2:178527127..178529647,2	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10497493	0.80[AFR][1000 genomes]
rs11679730	0.98[EUR][1000 genomes]
rs11680632	0.81[AFR][1000 genomes]
rs12618150	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13000926	0.80[AFR][1000 genomes]
rs13017234	0.98[EUR][1000 genomes]
rs13017429	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13025391	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13025904	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13026012	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13028757	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1317945	0.98[EUR][1000 genomes]
rs1358326	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1358327	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1527400	0.81[AFR][1000 genomes]
rs1527402	0.80[AFR][1000 genomes]
rs1527403	0.90[EUR][1000 genomes]
rs1527410	0.84[AFR][1000 genomes]
rs1534305	0.80[EUR][1000 genomes]
rs1544001	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1544003	0.84[AFR][1000 genomes]
rs1547580	0.83[AFR][1000 genomes]
rs1547581	0.84[AFR][1000 genomes]
rs1547582	0.84[AFR][1000 genomes]
rs1918345	0.89[EUR][1000 genomes]
rs1918346	0.91[EUR][1000 genomes]
rs1918347	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1997206	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1997207	0.89[EUR][1000 genomes]
rs1997208	0.80[AFR][1000 genomes]
rs2091442	0.90[EUR][1000 genomes]
rs2222712	0.89[EUR][1000 genomes]
rs2365620	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2365621	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2886422	0.80[AFR][1000 genomes]
rs3770003	0.84[AFR][1000 genomes]
rs4110134	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4341975	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4893973	0.80[EUR][1000 genomes]
rs4893975	0.81[AFR][1000 genomes]
rs4893976	0.81[AFR][1000 genomes]
rs4893977	0.83[AFR][1000 genomes]
rs4893978	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4893979	0.93[EUR][1000 genomes]
rs5025340	0.90[EUR][1000 genomes]
rs6433685	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6433686	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6433687	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6433688	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6721360	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6746233	0.81[EUR][1000 genomes]
rs7422544	0.80[AFR][1000 genomes]
rs7560080	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7560514	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7560737	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7573345	0.89[EUR][1000 genomes]
rs7577552	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7578901	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7586934	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7591796	0.84[AFR][1000 genomes]
rs7591897	0.84[AFR][1000 genomes]
rs7593744	0.94[EUR][1000 genomes]
rs7593753	0.98[EUR][1000 genomes]
rs7597640	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs941271	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs941276	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv583688	chr2:178427640-178540293	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv431812	chr2:178525371-178584470	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178517200-178530800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr2:178524800-178532800	Weak transcription	Fetal Kidney	kidney
3	chr2:178524800-178533400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:178528600-178534000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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