Variant report

Variant	rs6755406
Chromosome Location	chr2:191060269-191060270
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191058197..191060868-chr2:191061375..191063080,2	K562	blood:
2	chr2:191052209..191056005-chr2:191056223..191060273,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13027890	0.95[CHD][hapmap];1.00[EUR][1000 genomes]
rs13392291	1.00[ASN][1000 genomes]
rs16832401	0.81[CHD][hapmap]
rs58052205	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6720084	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs698603	0.88[EUR][1000 genomes]
rs698604	0.88[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.89[YRI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs698607	0.81[CHD][hapmap]
rs785213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3439178	chr2:190877215-191124499	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191046000-191074000	Weak transcription	HMEC	breast
2	chr2:191046000-191088400	Weak transcription	HSMMtube	muscle
3	chr2:191046200-191061800	Weak transcription	Primary T cells from cord blood	blood
4	chr2:191046200-191064200	Weak transcription	HSMM	muscle
5	chr2:191046400-191061600	Weak transcription	Fetal Muscle Leg	muscle
6	chr2:191046400-191061800	Weak transcription	Fetal Lung	lung
7	chr2:191046400-191061800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:191046400-191062000	Weak transcription	Adipose Nuclei	Adipose
9	chr2:191046400-191062000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:191046400-191063600	Weak transcription	HepG2	liver
11	chr2:191046400-191064400	Weak transcription	Pancreas	Pancrea
12	chr2:191046400-191064400	Weak transcription	Psoas Muscle	Psoas
13	chr2:191046400-191070400	Weak transcription	Fetal Stomach	stomach
14	chr2:191046600-191064400	Weak transcription	Brain Angular Gyrus	brain
15	chr2:191046600-191086400	Weak transcription	Colonic Mucosa	Colon
16	chr2:191047000-191061800	Weak transcription	Primary hematopoietic stem cells	blood
17	chr2:191047000-191080400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr2:191047200-191062000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr2:191047400-191061800	Weak transcription	Primary B cells from cord blood	blood
20	chr2:191047600-191081000	Weak transcription	Brain Anterior Caudate	brain
21	chr2:191048200-191061800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:191048200-191073800	Weak transcription	Aorta	Aorta
23	chr2:191048600-191062000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:191049200-191064400	Weak transcription	Brain Hippocampus Middle	brain
25	chr2:191049400-191062000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr2:191050200-191060600	Weak transcription	Fetal Heart	heart
27	chr2:191050400-191061600	Weak transcription	Fetal Intestine Large	intestine
28	chr2:191050400-191061800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr2:191050600-191061600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr2:191051600-191061600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:191051600-191061800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr2:191052000-191108800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr2:191052600-191062200	Weak transcription	Fetal Intestine Small	intestine
34	chr2:191052600-191063000	Weak transcription	Left Ventricle	heart
35	chr2:191053000-191078200	Weak transcription	Right Ventricle	heart
36	chr2:191054200-191060600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr2:191056600-191070200	Weak transcription	NHDF-Ad	bronchial
38	chr2:191056800-191061600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr2:191056800-191064400	Weak transcription	Esophagus	oesophagus
40	chr2:191056800-191124600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr2:191056800-191131800	Weak transcription	NHEK	skin
42	chr2:191057000-191078400	Weak transcription	Thymus	Thymus
43	chr2:191057200-191076200	Weak transcription	Fetal Kidney	kidney
44	chr2:191057400-191061800	Weak transcription	Liver	Liver
45	chr2:191057800-191087800	Weak transcription	Fetal Brain Female	brain
46	chr2:191058000-191076000	Weak transcription	Colon Smooth Muscle	Colon
47	chr2:191058200-191061600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr2:191059200-191061600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:191059400-191061600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr2:191059400-191061600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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