Variant report

Variant	rs6757959
Chromosome Location	chr2:100394655-100394656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:100393300..100395336-chr2:100401507..100403583,2	MCF-7	breast:
2	chr2:100392836..100396080-chr2:100396226..100398545,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4395293	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57107769	1.00[AMR][1000 genomes]
rs72956176	1.00[AMR][1000 genomes]
rs7561590	0.83[AFR][1000 genomes]
rs7599020	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431424	chr2:99652682-100494682	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757820	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv2759078	chr2:100380891-100546675	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1010971	chr2:100387986-100431935	Weak transcription ZNF genes & repeats Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100384200-100404400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr2:100389400-100394800	Weak transcription	Gastric	stomach
3	chr2:100389600-100399400	Weak transcription	Ovary	ovary
4	chr2:100389600-100400800	Weak transcription	Placenta	Placenta
5	chr2:100390200-100394800	Weak transcription	Fetal Lung	lung
6	chr2:100391600-100395200	Strong transcription	Primary B cells from cord blood	blood
7	chr2:100391600-100395600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr2:100393200-100395000	Strong transcription	Primary T cells from cord blood	blood
9	chr2:100393600-100396600	Weak transcription	Brain Hippocampus Middle	brain
10	chr2:100393800-100404000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr2:100394000-100394800	Strong transcription	Primary hematopoietic stem cells	blood
12	chr2:100394000-100403000	Weak transcription	Fetal Brain Female	brain
13	chr2:100394400-100394800	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:100394400-100405800	Weak transcription	Lung	lung
15	chr2:100394600-100394800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:100394600-100394800	ZNF genes & repeats	Dnd41	blood
17	chr2:100394600-100395000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr2:100394600-100395000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr2:100394600-100395000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr2:100394600-100395600	ZNF genes & repeats	Fetal Brain Male	brain
21	chr2:100394600-100400400	Weak transcription	Thymus	Thymus

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