Variant report

Variant	rs6759270
Chromosome Location	chr2:173069236-173069237
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10803866	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10803867	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12991642	0.84[EUR][1000 genomes]
rs17219125	0.85[EUR][1000 genomes]
rs36027698	0.83[EUR][1000 genomes]
rs4972710	0.85[EUR][1000 genomes]
rs6723339	0.84[EUR][1000 genomes]
rs6751665	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv2762294	chr2:173028656-173071270	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv3033	chr2:173063284-173108586	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173065400-173072600	Weak transcription	Primary hematopoietic stem cells	blood
2	chr2:173065400-173073600	Weak transcription	NHEK	skin
3	chr2:173068800-173070000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr2:173069000-173069400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:173069000-173069600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:173069000-173070000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:173069000-173070200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr2:173069000-173070400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:173069000-173070400	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr2:173069200-173069800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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