Variant report

Variant	rs67594010
Chromosome Location	chr3:142341701-142341702
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11707731	0.83[EUR][1000 genomes]
rs11709900	0.87[EUR][1000 genomes]
rs11716882	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13075800	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091637	0.82[EUR][1000 genomes]
rs16852464	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16852543	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2354859	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35238606	0.81[EUR][1000 genomes]
rs68065420	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877560	chr3:142132749-142362179	Strong transcription ZNF genes & repeats Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142334000-142357200	Weak transcription	Pancreas	Pancrea
2	chr3:142337800-142348400	Weak transcription	Gastric	stomach
3	chr3:142338000-142344200	Weak transcription	Colonic Mucosa	Colon
4	chr3:142338400-142341800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:142338600-142343800	Weak transcription	HSMMtube	muscle
6	chr3:142339400-142342600	Enhancers	Duodenum Mucosa	Duodenum
7	chr3:142340200-142345600	Weak transcription	A549	lung
8	chr3:142340600-142342800	Enhancers	Fetal Intestine Large	intestine
9	chr3:142340600-142343400	Enhancers	Fetal Intestine Small	intestine
10	chr3:142340800-142341800	Weak transcription	Stomach Mucosa	stomach
11	chr3:142341000-142341800	Weak transcription	Small Intestine	intestine
12	chr3:142341000-142343200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:142341200-142341800	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr3:142341400-142341800	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr3:142341400-142346200	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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