Variant report

Variant	rs6759602
Chromosome Location	chr2:10695757-10695758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10690817..10693702-chr2:10693915..10697831,3	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57810121	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58188603	1.00[AMR][1000 genomes]
rs58615432	1.00[AMR][1000 genomes]
rs60258740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6432103	1.00[AMR][1000 genomes]
rs6713400	1.00[AFR][1000 genomes]
rs73165947	1.00[AMR][1000 genomes]
rs73165952	1.00[AMR][1000 genomes]
rs73182443	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007185	chr2:10540386-10791743	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv833370	chr2:10625149-10785402	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1009897	chr2:10627248-10751468	Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv873654	chr2:10655141-10698364	Enhancers Genic enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv873661	chr2:10675549-10703476	Bivalent Enhancer Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv525241	chr2:10684391-10703476	Bivalent Enhancer Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10688200-10708800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr2:10689200-10710600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:10689800-10701800	Weak transcription	Pancreas	Pancrea
4	chr2:10690800-10698800	Weak transcription	Fetal Brain Female	brain
5	chr2:10691200-10701400	Weak transcription	Right Atrium	heart
6	chr2:10691800-10700800	Weak transcription	Spleen	Spleen
7	chr2:10692200-10709600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:10692600-10705400	Weak transcription	Fetal Thymus	thymus
9	chr2:10693000-10708800	Weak transcription	NHEK	skin
10	chr2:10693200-10700200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:10693200-10700200	Weak transcription	Brain Germinal Matrix	brain
12	chr2:10694200-10700200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:10694200-10710000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:10695200-10695800	Enhancers	Adipose Nuclei	Adipose
15	chr2:10695200-10696000	Enhancers	Lung	lung
16	chr2:10695200-10696200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:10695200-10696200	Enhancers	HUVEC	blood vessel
18	chr2:10695200-10696400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
19	chr2:10695200-10696600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
20	chr2:10695200-10696600	Enhancers	Fetal Muscle Trunk	muscle
21	chr2:10695200-10696800	Enhancers	Fetal Muscle Leg	muscle
22	chr2:10695400-10704600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:10695600-10695800	Weak transcription	Left Ventricle	heart
24	chr2:10695600-10696000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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