Variant report

Variant	rs675999
Chromosome Location	chr11:100725702-100725703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:100721964..100724850-chr11:100725168..100727947,2	K562	blood:
2	chr11:100447010..100447615-chr11:100725659..100726412,2	MCF-7	breast:
3	chr11:100552875..100554819-chr11:100725127..100727226,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17652307	1.00[AFR][1000 genomes]
rs656698	1.00[CEU][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv468849	chr11:100713227-100733120	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556129	chr11:100713227-100733120	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100703000-100731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:100716800-100727000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:100720200-100745000	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:100720600-100726400	Weak transcription	Adipose Nuclei	Adipose
5	chr11:100720600-100728000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:100720600-100733400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:100720800-100726000	Weak transcription	Fetal Kidney	kidney
8	chr11:100721000-100725800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:100721000-100726000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:100721000-100726000	Weak transcription	Osteobl	bone
11	chr11:100721000-100730800	Weak transcription	Fetal Intestine Small	intestine
12	chr11:100721200-100726000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:100721600-100733400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr11:100722200-100726200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:100722200-100734000	Weak transcription	Fetal Stomach	stomach
16	chr11:100722600-100725800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr11:100722600-100733800	Weak transcription	NHDF-Ad	bronchial
18	chr11:100722800-100728200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr11:100722800-100746400	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:100722800-100747200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:100723400-100731200	Weak transcription	Placenta	Placenta
22	chr11:100723600-100725800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:100723600-100726800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:100723600-100727200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr11:100723800-100726000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr11:100724000-100726400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr11:100724400-100725800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr11:100725200-100727200	Enhancers	A549	lung
29	chr11:100725400-100726200	Enhancers	Stomach Mucosa	stomach
30	chr11:100725400-100729200	Enhancers	Fetal Heart	heart
31	chr11:100725600-100725800	Enhancers	Liver	Liver
32	chr11:100725600-100729200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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