Variant report
| Variant | rs6761017 |
|---|---|
| Chromosome Location | chr2:100957610-100957611 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:100944968..100947303-chr2:100956166..100958150,2 | MCF-7 | breast: | |
| 2 | chr2:100944547..100946729-chr2:100956360..100957899,2 | MCF-7 | breast: | |
| 3 | chr2:100952978..100954595-chr2:100957263..100960218,2 | MCF-7 | breast: | |
| 4 | chr2:100937601..100941206-chr2:100954662..100959386,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000170500 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10186278 | 0.91[AFR][1000 genomes] |
| rs10193640 | 0.91[AFR][1000 genomes] |
| rs10208503 | 0.91[AFR][1000 genomes] |
| rs13430207 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1898572 | 0.94[AFR][1000 genomes] |
| rs6542936 | 0.96[AFR][1000 genomes] |
| rs72958145 | 0.89[AFR][1000 genomes] |
| rs7599486 | 0.91[AFR][1000 genomes] |
| rs7602231 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7605124 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs768458 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs768459 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007777 | chr2:100816913-101308914 | Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv535844 | chr2:100816913-101308914 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 30 gene(s) | inside rSNPs | diseases |
| 3 | nsv834311 | chr2:100816917-100990036 | Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 4 | nsv582531 | chr2:100908508-101207639 | Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:100956800-100967200 | Weak transcription | Gastric | stomach |
