Variant report

Variant	rs6761070
Chromosome Location	chr2:12145188-12145189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:12142937..12145403-chr2:12173680..12175523,2	K562	blood:
2	chr2:12107920..12110681-chr2:12144590..12147172,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10202517	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10210269	1.00[CEU][hapmap];0.96[CHD][hapmap];0.86[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10929775	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10929776	1.00[CEU][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13002231	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1550395	0.82[CHB][hapmap]
rs1550396	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1550398	1.00[CEU][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1550399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4669793	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6754671	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7563182	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003899	chr2:11789374-12248081	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:12137200-12148800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:12139000-12145200	Weak transcription	HUVEC	blood vessel
3	chr2:12139200-12146200	Weak transcription	NHLF	lung
4	chr2:12139600-12146200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr2:12141400-12147200	Weak transcription	K562	blood
6	chr2:12142400-12145600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:12144600-12145400	Enhancers	GM12878-XiMat	blood
8	chr2:12144600-12145600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:12144600-12147200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr2:12144800-12147000	Enhancers	Primary T cells from cord blood	blood
11	chr2:12145000-12145200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr2:12145000-12145200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr2:12145000-12145200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr2:12145000-12145200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
15	chr2:12145000-12145600	Enhancers	Dnd41	blood
16	chr2:12145000-12146200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr2:12145000-12146800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr2:12145000-12147200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr2:12145000-12147200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr2:12145000-12147400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr2:12145000-12147400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:12145000-12147600	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr2:12145000-12149800	Enhancers	Primary B cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links