Variant report

Variant	rs6761223
Chromosome Location	chr2:10611403-10611404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10604691..10609376-chr2:10609961..10612604,4	K562	blood:
2	chr2:10610764..10614840-chr2:10622811..10625780,3	MCF-7	breast:
3	chr2:10598894..10601084-chr2:10611398..10613354,2	K562	blood:
4	chr2:10593514..10595515-chr2:10610496..10612872,2	K562	blood:
5	chr2:10610441..10612912-chr2:10630602..10632976,2	MCF-7	breast:
6	chr2:10610276..10612737-chr2:10628306..10630616,2	K562	blood:
7	chr2:10586151..10591362-chr2:10608083..10613123,10	K562	blood:
8	chr2:10610452..10613054-chr2:10617815..10619418,2	MCF-7	breast:
9	chr2:10611237..10613247-chr2:10627785..10629806,2	K562	blood:
10	chr2:10604714..10607056-chr2:10610628..10612481,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55955247	1.00[EUR][1000 genomes]
rs7560911	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7601956	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873645	chr2:10537347-10612091	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
3	nsv1007185	chr2:10540386-10791743	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
4	nsv873646	chr2:10550517-10612091	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	esv2756905	chr2:10595578-10688969	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2759025	chr2:10595578-10688969	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6761223	FXYD2	trans	lymphoblastoid	seeQTL
rs6761223	GPR171	trans	lymphoblastoid	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10590800-10615200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:10601400-10621400	Weak transcription	Right Atrium	heart
3	chr2:10608600-10617200	Weak transcription	Thymus	Thymus
4	chr2:10609600-10611600	Enhancers	Fetal Muscle Trunk	muscle
5	chr2:10610600-10617400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr2:10610800-10612200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr2:10611400-10611600	Bivalent Enhancer	HepG2	liver
8	chr2:10611400-10611800	Enhancers	K562	blood
9	chr2:10611400-10612200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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