Variant report

Variant	rs6762207
Chromosome Location	chr3:119206172-119206173
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119204680..119206850-chr3:119215269..119217444,2	K562	blood:
2	chr3:119201366..119207142-chr3:119210949..119217240,7	K562	blood:

Variant related genes	Relation type
ENSG00000113845	Chromatin interaction
ENSG00000272662	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs6776994	0.92[EUR][1000 genomes]
rs6778945	0.93[EUR][1000 genomes]
rs7427609	0.89[EUR][1000 genomes]
rs9850447	0.95[EUR][1000 genomes]
rs9867768	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829695	chr3:119178890-119367996	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119188400-119216200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr3:119188400-119216800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:119188600-119216200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:119188800-119216200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr3:119189000-119216200	Weak transcription	Stomach Mucosa	stomach
6	chr3:119189000-119216200	Weak transcription	HUVEC	blood vessel
7	chr3:119189000-119216600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:119189600-119209200	Strong transcription	Primary B cells from cord blood	blood
9	chr3:119189600-119211800	Strong transcription	Primary B cells from peripheral blood	blood
10	chr3:119189600-119211800	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr3:119189800-119210000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr3:119189800-119211400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr3:119189800-119212200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr3:119189800-119216000	Weak transcription	Fetal Heart	heart
15	chr3:119190000-119211800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr3:119190000-119212200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:119190000-119212200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:119190400-119212200	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr3:119190600-119211800	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr3:119190600-119212000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr3:119190800-119216400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:119191000-119216400	Weak transcription	Fetal Brain Male	brain
23	chr3:119192000-119209800	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:119192400-119207200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr3:119192400-119216400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr3:119195800-119212000	Strong transcription	Liver	Liver
27	chr3:119196400-119216200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:119196400-119216600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr3:119196800-119216800	Weak transcription	Small Intestine	intestine
30	chr3:119197000-119211200	Weak transcription	K562	blood
31	chr3:119197000-119216400	Weak transcription	Colon Smooth Muscle	Colon
32	chr3:119197400-119216600	Weak transcription	Aorta	Aorta
33	chr3:119198200-119208200	Weak transcription	Fetal Intestine Small	intestine
34	chr3:119201600-119206800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr3:119201600-119207600	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr3:119201600-119208000	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr3:119201800-119209400	Strong transcription	Stomach Smooth Muscle	stomach
38	chr3:119201800-119209600	Strong transcription	Rectal Mucosa Donor 29	rectum
39	chr3:119202400-119211600	Strong transcription	GM12878-XiMat	blood
40	chr3:119202400-119211800	Strong transcription	Fetal Brain Female	brain
41	chr3:119202400-119212000	Strong transcription	Primary T cells from cord blood	blood
42	chr3:119202400-119213800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr3:119202600-119211800	Strong transcription	Duodenum Mucosa	Duodenum
44	chr3:119202800-119208000	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr3:119202800-119208800	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr3:119202800-119208800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr3:119202800-119208800	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr3:119202800-119209000	Strong transcription	Fetal Intestine Large	intestine
49	chr3:119202800-119211800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:119202800-119211800	Strong transcription	Fetal Thymus	thymus

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