Variant report

Variant	rs6762254
Chromosome Location	chr3:133528187-133528188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133378019..133382399-chr3:133522860..133528810,6	K562	blood:
2	chr3:133523551..133526872-chr3:133527016..133531055,8	MCF-7	breast:
3	chr3:133523642..133526680-chr3:133527233..133530883,4	K562	blood:

Variant related genes	Relation type
ENSG00000144867	Chromatin interaction
ENSG00000242337	Chromatin interaction
ENSG00000163781	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16841014	0.87[AMR][1000 genomes]
rs6773313	0.87[AMR][1000 genomes]
rs6806081	0.83[AFR][1000 genomes]
rs6809130	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7619758	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv4018	chr3:133485867-133530668	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133525400-133528400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:133525400-133529800	Weak transcription	Lung	lung
3	chr3:133525400-133532800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:133525400-133532800	Weak transcription	Esophagus	oesophagus
5	chr3:133525400-133533600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:133525400-133533600	Weak transcription	Spleen	Spleen
7	chr3:133525400-133539000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:133525600-133528800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr3:133525600-133529000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:133525600-133529000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:133525600-133529800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:133525600-133529800	Weak transcription	Aorta	Aorta
13	chr3:133525600-133529800	Weak transcription	Thymus	Thymus
14	chr3:133525600-133531600	Weak transcription	Colonic Mucosa	Colon
15	chr3:133525600-133532800	Weak transcription	Ovary	ovary
16	chr3:133525600-133533600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr3:133525600-133533600	Weak transcription	Pancreas	Pancrea
18	chr3:133525600-133533800	Weak transcription	Fetal Kidney	kidney
19	chr3:133525600-133533800	Weak transcription	Psoas Muscle	Psoas
20	chr3:133525600-133534200	Weak transcription	Right Ventricle	heart
21	chr3:133525600-133534400	Weak transcription	Brain Substantia Nigra	brain
22	chr3:133525600-133538400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:133525600-133539000	Weak transcription	Gastric	stomach
24	chr3:133525600-133539200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:133525600-133541000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr3:133525800-133528400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:133525800-133529000	Weak transcription	Brain Angular Gyrus	brain
28	chr3:133525800-133529200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:133525800-133529600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr3:133525800-133529600	Weak transcription	Fetal Brain Female	brain
31	chr3:133525800-133529800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr3:133525800-133531400	Weak transcription	Fetal Heart	heart
33	chr3:133525800-133531800	Weak transcription	HSMMtube	muscle
34	chr3:133525800-133533600	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:133525800-133534000	Weak transcription	Rectal Smooth Muscle	rectum
36	chr3:133525800-133536400	Weak transcription	Colon Smooth Muscle	Colon
37	chr3:133525800-133538800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr3:133525800-133538800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr3:133525800-133538800	Weak transcription	Stomach Mucosa	stomach
40	chr3:133525800-133541000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr3:133526000-133528200	Weak transcription	HMEC	breast
42	chr3:133526000-133528400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr3:133526000-133529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr3:133526000-133529200	Weak transcription	Fetal Stomach	stomach
45	chr3:133526000-133529400	Weak transcription	Brain Germinal Matrix	brain
46	chr3:133526000-133529600	Weak transcription	K562	blood
47	chr3:133526000-133531600	Weak transcription	Adipose Nuclei	Adipose
48	chr3:133526200-133528600	Weak transcription	Fetal Brain Male	brain
49	chr3:133526200-133531000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:133526200-133537400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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