Variant report
| Variant | rs6762490 |
|---|---|
| Chromosome Location | chr3:146376451-146376452 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs12695824 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1380167 | 0.85[ASN][1000 genomes] |
| rs1380168 | 0.85[ASN][1000 genomes] |
| rs1613380 | 0.85[ASN][1000 genomes] |
| rs1627176 | 0.85[ASN][1000 genomes] |
| rs1674584 | 0.83[ASN][1000 genomes] |
| rs1674585 | 0.85[ASN][1000 genomes] |
| rs1674586 | 0.85[ASN][1000 genomes] |
| rs1674587 | 0.85[ASN][1000 genomes] |
| rs1674588 | 0.85[ASN][1000 genomes] |
| rs1674589 | 0.82[ASN][1000 genomes] |
| rs1674591 | 0.85[ASN][1000 genomes] |
| rs1674592 | 0.83[ASN][1000 genomes] |
| rs1674593 | 0.83[ASN][1000 genomes] |
| rs1702384 | 0.83[ASN][1000 genomes] |
| rs1702385 | 0.85[ASN][1000 genomes] |
| rs1702386 | 0.85[ASN][1000 genomes] |
| rs1702387 | 0.85[ASN][1000 genomes] |
| rs1702388 | 0.85[ASN][1000 genomes] |
| rs1702389 | 0.85[ASN][1000 genomes] |
| rs1702390 | 0.85[ASN][1000 genomes] |
| rs1702391 | 0.85[ASN][1000 genomes] |
| rs1705839 | 0.83[ASN][1000 genomes] |
| rs1705840 | 0.85[ASN][1000 genomes] |
| rs1705841 | 0.85[ASN][1000 genomes] |
| rs1705842 | 0.85[ASN][1000 genomes] |
| rs1705843 | 0.85[ASN][1000 genomes] |
| rs1705844 | 0.85[ASN][1000 genomes] |
| rs34638471 | 0.84[ASN][1000 genomes] |
| rs4541374 | 0.85[ASN][1000 genomes] |
| rs4681329 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4681330 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs62275408 | 0.85[ASN][1000 genomes] |
| rs6799282 | 0.85[ASN][1000 genomes] |
| rs6799360 | 0.85[ASN][1000 genomes] |
| rs8179985 | 0.85[ASN][1000 genomes] |
| rs9810961 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv516386 | chr3:146366513-146758405 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv4047 | chr3:146368154-146401858 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | esv3369526 | chr3:146374303-146400737 | Enhancers Weak transcription Active TSS | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 4 | nsv591937 | chr3:146375764-146390316 | Enhancers Weak transcription Active TSS | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:146375600-146376800 | Enhancers | HepG2 | liver |
| 2 | chr3:146376000-146376800 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
| 3 | chr3:146376200-146376600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
