Variant report

Variant	rs6763556
Chromosome Location	chr3:136762249-136762250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1470142	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1682362	0.83[AMR][1000 genomes]
rs1682366	0.80[AMR][1000 genomes]
rs181732	0.83[AMR][1000 genomes]
rs4678281	0.85[AMR][1000 genomes]
rs6439678	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6763000	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6763813	0.87[AMR][1000 genomes]
rs9817061	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877534	chr3:136676303-136765859	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv524856	chr3:136693459-137190765	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1012111	chr3:136695367-137343430	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv4028	chr3:136752048-136777353	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136752000-136764600	Weak transcription	Esophagus	oesophagus
2	chr3:136755000-136765200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:136757000-136794000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:136759200-136763600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:136760800-136765400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:136761000-136765600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:136761000-136765600	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:136761000-136765600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:136761400-136765600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:136761600-136763000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:136761600-136765400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:136761600-136766000	Weak transcription	NHEK	skin
13	chr3:136761800-136765600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:136762000-136765600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:136762000-136765600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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