Variant report

Variant	rs6764107
Chromosome Location	chr3:160093285-160093286
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160093102..160095137-chr3:160110898..160113239,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2015054	1.00[AMR][1000 genomes]
rs2015065	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3773371	0.81[YRI][hapmap]
rs55815116	0.83[AFR][1000 genomes]
rs56150006	0.88[AFR][1000 genomes]
rs59700052	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60304551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60703878	1.00[AFR][1000 genomes]
rs60824140	1.00[AMR][1000 genomes]
rs62272181	0.88[AFR][1000 genomes]
rs62272185	0.88[AFR][1000 genomes]
rs62272197	0.88[AFR][1000 genomes]
rs6441307	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs66769612	0.88[AFR][1000 genomes]
rs6772987	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7611148	0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7611573	0.87[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7618017	0.88[AFR][1000 genomes]
rs7631284	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	esv1801474	chr3:160012843-160153305	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	206 gene(s)	inside rSNPs	diseases
7	nsv1008519	chr3:160038710-160292589	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
8	esv1795255	chr3:160089896-160153305	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	205 gene(s)	inside rSNPs	diseases
9	esv1801686	chr3:160089896-160248363	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	211 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160055200-160103400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:160056400-160098000	Weak transcription	Aorta	Aorta
3	chr3:160061400-160109600	Weak transcription	Fetal Heart	heart
4	chr3:160063400-160094000	Weak transcription	Fetal Brain Female	brain
5	chr3:160066400-160099200	Weak transcription	NHEK	skin
6	chr3:160067800-160097800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:160068600-160096000	Weak transcription	Gastric	stomach
8	chr3:160068800-160094000	Weak transcription	Adipose Nuclei	Adipose
9	chr3:160068800-160094000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:160069000-160115200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:160071400-160098200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr3:160071400-160102000	Weak transcription	Small Intestine	intestine
13	chr3:160071600-160099400	Weak transcription	Placenta	Placenta
14	chr3:160072000-160096400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:160072600-160096200	Weak transcription	HepG2	liver
16	chr3:160073200-160097200	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr3:160073400-160099200	Weak transcription	HSMMtube	muscle
18	chr3:160073800-160108400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:160074800-160101400	Weak transcription	Brain Angular Gyrus	brain
20	chr3:160075000-160094400	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:160075600-160094000	Weak transcription	HSMM	muscle
22	chr3:160076200-160116200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr3:160077400-160098200	Weak transcription	Lung	lung
24	chr3:160079800-160093400	Weak transcription	Fetal Brain Male	brain
25	chr3:160081200-160102200	Weak transcription	HUVEC	blood vessel
26	chr3:160081800-160100000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr3:160083000-160097000	Weak transcription	Right Ventricle	heart
28	chr3:160083400-160094000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr3:160083400-160113000	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:160083600-160098000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:160083800-160097400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr3:160083800-160108200	Weak transcription	GM12878-XiMat	blood
33	chr3:160083800-160116000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr3:160084000-160104000	Weak transcription	Brain Hippocampus Middle	brain
35	chr3:160087600-160098000	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr3:160088200-160099800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr3:160088800-160101400	Weak transcription	Hela-S3	cervix
38	chr3:160088800-160108600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr3:160088800-160108600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr3:160088800-160116200	Weak transcription	Primary B cells from cord blood	blood
41	chr3:160088800-160116200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr3:160089000-160098000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr3:160089000-160104000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr3:160089800-160095000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr3:160090400-160094600	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr3:160090400-160094600	Weak transcription	Esophagus	oesophagus
47	chr3:160090400-160096400	Weak transcription	Colonic Mucosa	Colon
48	chr3:160090600-160094800	Strong transcription	Dnd41	blood
49	chr3:160090600-160095000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:160090600-160095000	Strong transcription	Fetal Thymus	thymus

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