Variant report

Variant	rs67645219
Chromosome Location	chr7:124307800-124307801
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10954043	0.90[ASN][1000 genomes]
rs12670293	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1524768	0.85[ASN][1000 genomes]
rs1524769	0.90[ASN][1000 genomes]
rs1983457	0.90[ASN][1000 genomes]
rs34791421	0.90[ASN][1000 genomes]
rs6466943	0.97[ASN][1000 genomes]
rs66885595	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72607722	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7798946	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275213	chr7:124300969-124311742	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124307000-124308200	Enhancers	Brain Anterior Caudate	brain
2	chr7:124307200-124308200	Enhancers	Placenta	Placenta
3	chr7:124307400-124307800	Flanking Active TSS	Liver	Liver
4	chr7:124307400-124309000	Enhancers	Brain Angular Gyrus	brain
5	chr7:124307600-124307800	Active TSS	Brain Hippocampus Middle	brain
6	chr7:124307600-124307800	Flanking Active TSS	Fetal Lung	lung
7	chr7:124307600-124308000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:124307600-124308000	Enhancers	Brain Cingulate Gyrus	brain
9	chr7:124307600-124308000	Active TSS	Brain Substantia Nigra	brain
10	chr7:124307600-124308000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr7:124307600-124308000	Enhancers	NHLF	lung
12	chr7:124307600-124308200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr7:124307600-124308400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr7:124307800-124308000	Active TSS	Fetal Lung	lung
15	chr7:124307800-124308200	Enhancers	Aorta	Aorta
16	chr7:124307800-124308200	Enhancers	Liver	Liver
17	chr7:124307800-124308200	Flanking Active TSS	Brain Hippocampus Middle	brain
18	chr7:124307800-124309000	Enhancers	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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